View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7786_low_4 (Length: 634)
Name: NF7786_low_4
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 20 - 618
Target Start/End: Complemental strand, 40378624 - 40378026
Alignment:
| Q |
20 |
ggataatcaacacttatgggctttctccctgaaagaagctcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40378624 |
ggataatcaacacttatgggctttctccctgaaagaagctcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatga |
40378525 |
T |
|
| Q |
120 |
agtattcaggagccatataactgcataaacaggtgcaatacataactcaggatcgctctaaaaacgttttctgctgcatgtatggttaagaacggatgat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
40378524 |
agtattcaggagccatataactgcataaacaggtgcaatacatgattcaggatcgctctaaaaacgttttctgtagcatgtatggataagaacggatgat |
40378425 |
T |
|
| Q |
220 |
aagtttttgatggatttcaaagtactaacccaaaagttccagcaacatctgtgcacgttatatgcgatgatgacgttgatgcccacgtagccaatccaaa |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
40378424 |
aagtttttgatggatttcaaattactaacccaaaggttccagcaacatctgtgcacgttatatgagatgatgaagttgatgcccacgtagccaatccaaa |
40378325 |
T |
|
| Q |
320 |
atcagagagctgaataaaatcaaagtagaccaacataaggattgattaatacaaataattcgaaatattaaaatccaatcaatcggaagatagataaata |
419 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40378324 |
atcagagagctgaataaaatcaaagcagaccagcataaggattgattaatacaaataattcgaaatattaaaagccaatcaatcggaagatagataaata |
40378225 |
T |
|
| Q |
420 |
cctgaggttcaaaatcttcggatagtaatacatttgatgattttacatcccgatgaatcacgggatgatcatctttacaatgcagatattccaaagcttc |
519 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40378224 |
cctgaggttcaaaatcttcagatagtaatacattggatgattttacatcccgatgaatcacgggatgatcgtctttacaatgcagatattccaaagcttc |
40378125 |
T |
|
| Q |
520 |
agcaacgcctgttgcaaccttatatctctgtgtccaaccaaactcgcgagggtttttcttagtccctaatttagcatggaaaagaaataagtatgatgt |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40378124 |
agcaacgcctgttgcaaccttatatctctgtgtccaaccaaactcgcgagggtttttcttagtccctaatttagcatggaaaagaaataagtatgatgt |
40378026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 10260087 - 10259958
Alignment:
| Q |
19 |
aggataatcaacacttatgggctttctccctgaaagaagctcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatg |
118 |
Q |
| |
|
||||||||| ||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| || |||||| |
|
|
| T |
10260087 |
aggataatcgccacttataggctttctccgtgtaagaagctcaagaagcaccacaccaaatgcatagacatcaatcttatcatttactttaccatacatg |
10259988 |
T |
|
| Q |
119 |
aagtattcaggagccatataactgcataaa |
148 |
Q |
| |
|
|| |||||||| |||| |||||||||||| |
|
|
| T |
10259987 |
aaatattcaggtgccaagtaactgcataaa |
10259958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 418 - 565
Target Start/End: Complemental strand, 10259696 - 10259549
Alignment:
| Q |
418 |
tacctgaggttcaaaatcttcggatagtaatacatttgatgattttacatcccgatgaatcacgggatgatcatctttacaatgcagatattccaaagct |
517 |
Q |
| |
|
|||||||||||||||||| || |||| ||| |||||||||||||||||||| ||||| ||||| || || ||| ||| ||||||||| |||||||| |
|
|
| T |
10259696 |
tacctgaggttcaaaatcctcagataataacacatttgatgattttacatcacgatggatcacaggttggtcactgttattatgcagatactccaaagcc |
10259597 |
T |
|
| Q |
518 |
tcagcaacgcctgttgcaaccttatatctctgtgtccaaccaaactcg |
565 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||| |||||| |
|
|
| T |
10259596 |
tcagcaacgcccattgccaccttatatctctcagtccaacctaactcg |
10259549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 10259861 - 10259778
Alignment:
| Q |
247 |
acccaaaagttccagcaacatctgtgcacgttatatgcgatgatgacgttgatgcccacgtagccaatccaaaatcagagagct |
330 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||| || ||||||||||| | || | |||||| |||||||||| |
|
|
| T |
10259861 |
acccaaaagttccggcaacatctgtgcaggttatagatgatgacgaggttgatgcccatttcgcaagtccaaagtcagagagct |
10259778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 27669920 - 27669993
Alignment:
| Q |
59 |
tcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatgaagtattcaggagc |
132 |
Q |
| |
|
||||| ||||| ||||| || |||||||| || ||||| ||| | ||||| || |||||||||||||||||||| |
|
|
| T |
27669920 |
tcaagtagcactacaccgaaggcatagacatctatcttgtcactaacttttccatacatgaagtattcaggagc |
27669993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University