View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7786_low_6 (Length: 440)
Name: NF7786_low_6
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 14321448 - 14321030
Alignment:
| Q |
8 |
atggacatcgtgtgtcgcctttctaccggtggtaaaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgt |
107 |
Q |
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| T |
14321448 |
atggacattgtgtgtcgcctttctaccggtggtacaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtcgtcgacttaaaggtttgt |
14321349 |
T |
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| Q |
108 |
caagggtcgtgatgcggtgttgtatctagtttatggatggttggtggcaatttgttttaagatctaccgcctccgtgcttgtgggttggtgttttttata |
207 |
Q |
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| T |
14321348 |
caagggtcgcgatgcggtgttgtatctagtttctggatggttggtgacaatttgttttaagatctaccacctccgtgccggtgggttggtgtttttgata |
14321249 |
T |
|
| Q |
208 |
ttagtcgcggttgtttcaggtgccaccggcggactgtgatgagcatcgtctttcagttgtttgccctcttaatatatgtatctcatgattgattctgact |
307 |
Q |
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| T |
14321248 |
ttcgtcgcggttgtttaaggtgccaccggcggactatgatgagcatcgtctttcaattgtttgcccccttaatatatgtatctcatgatcgattttgact |
14321149 |
T |
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| Q |
308 |
aatatgatatctcgttgttctctatgtttggcttggattgtggagttcgaaagagctgtttagcttgctgacatttgttccagggagttgatggtatgtg |
407 |
Q |
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| T |
14321148 |
aatatgatatctcgtcgttctctatgtttggcttggattgtgg-gttagaaagagccgtttagcttgttgacatttgttccagggagttgatggtatgtg |
14321050 |
T |
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| Q |
408 |
gctccgcttccgtgttgatg |
427 |
Q |
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| T |
14321049 |
ggtccgcttccgtgttgatg |
14321030 |
T |
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Back To:
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 41907708 - 41907831
Alignment:
| Q |
57 |
tcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgtgatgcggtgttgtatctagtttatggatggttggtggca |
156 |
Q |
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||||||| |||| ||||||||||||| |||| || |||| |||||||| ||||||| ||||| ||||||||||| ||||| | |||||||| |||| |
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| T |
41907708 |
tcccaacattctccggttgtcctcttcgatgccgttgactgaaaggttttccaagggttgtgatatggtgttgtatccagtttctagatggttgctggcg |
41907807 |
T |
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| Q |
157 |
atttgttttaagatctaccgcctc |
180 |
Q |
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| T |
41907808 |
atctgttttcagatttaccgcctc |
41907831 |
T |
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