View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7786_low_8 (Length: 389)
Name: NF7786_low_8
Description: NF7786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7786_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 22718939 - 22719295
Alignment:
| Q |
1 |
tcaactgattggttgtcatacattgcttcaggtaaaataaatacatggttctttatataacttcaaagatgaaatagactatgttgtagtattttcgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | | |
|
|
| T |
22718939 |
tcaactgattggttgtcatacattgcttcaggtaaaataaatacatggttctttatataactttaaagatgaaatagactatgttg------tttactaa |
22719032 |
T |
|
| Q |
101 |
tttggagatggtttattatatattgattatggcataaacatttcaacacttttggggtgttggagccaaggattttgaggaaggatacatggagaatcga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22719033 |
tt------------attatatattgattatggcataaacatttcaacacttttggggtgttggagccaaggattttgaggaaggatacatggagaatcga |
22719120 |
T |
|
| Q |
201 |
cacccgcgtgctaacatgtttacatctcttaagggtctcattgtcacaaacctttaccgagaggacctggaccggttgttagtgaatgattgcgtctttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22719121 |
cacccgcgtgctaacatgtttacatctcttaagggtctcattgtcacaaacctttaccgagaggacttggaccggttgttagtgaatgattgcgtctttt |
22719220 |
T |
|
| Q |
301 |
aaccatatgtcgctcgctaaaacgcacattcattctagaacatcagcgtctactctggtaggatcagatattaac |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22719221 |
aaccatatgtcgctcgctaaaacgcacattcattctagaacatcagcgtctactctggtaggatcagatattaac |
22719295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Original strand, 22718877 - 22718906
Alignment:
| Q |
87 |
tagtattttcgtgatttggagatggtttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22718877 |
tagtattttcgtgatttggagatggtttat |
22718906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 36659469 - 36659396
Alignment:
| Q |
160 |
ttggagccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaaggg |
235 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |||||||||| |||| | ||||||||||| |||||||| |
|
|
| T |
36659469 |
ttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggt--gatgtttacatcgcttaaggg |
36659396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 32079363 - 32079271
Alignment:
| Q |
166 |
ccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaagggtctcattgtcacaaacctttacc |
258 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||||||| | |||| || ||||||||| | ||||||| || ||| |||||||||| ||||| |
|
|
| T |
32079363 |
ccaaggattttgagtaagggtacatggaggatcgacactcacgtgttaggatgtttacaccgcttaaggatcacatggtcacaaacccttacc |
32079271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University