View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7787_high_2 (Length: 596)
Name: NF7787_high_2
Description: NF7787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7787_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 10 - 588
Target Start/End: Original strand, 12888862 - 12889445
Alignment:
| Q |
10 |
gacatcacaattttcaagtttggagtagaggatggtagatgatggtgtatgacggatggccaaaattgccatctat-----cgccatgccatgtgccctg |
104 |
Q |
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| T |
12888862 |
gacaccacaattttcaagtttggagtagaggatggtagatgatggtgtacgacggatggccaaaactgccacctatggtgtcgccatggcatgtgccctt |
12888961 |
T |
|
| Q |
105 |
cacaaattgcctatagcggctggcacatcatccaccacgacactccaccacggctgctatttttcaacattgcaagcaagcacggcttaatataaatgtg |
204 |
Q |
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| T |
12888962 |
cacaaattgcctgtagcggctggcacatcatccgccacgacactccaccacgactactattttccaacattgcaagcaagcacggcttaatataaatgtg |
12889061 |
T |
|
| Q |
205 |
aaatttgaaatcattgtgatttcctatgttaagattaccaaaatggaaaatgaccaagctgtttcttgcaatacattcagaacagaccagagttaaataa |
304 |
Q |
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| T |
12889062 |
aaatttgaaatcattgagatttcctatgttaagattaccaaaatggaaaatgaccaagctgtttcctgaaatacattcagaacagaccagagttaaataa |
12889161 |
T |
|
| Q |
305 |
ctcaaacacagtagaaatataactaaccagtatcatctcttcgtcttcatcttcatcataattaccatccttttccttattggtggaatccctgagagaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |
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| T |
12889162 |
ctcaaacacagtagaaatataactaaccagtatcatctcttcgtcttcatcttcatcatagttaccatccttttccttattggtggaattcccgagagaa |
12889261 |
T |
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| Q |
405 |
cttgaacttgttacattttttactaacttcgcattttcctccatatcgatgcatgcggctaacctaatgggatcatcaaaacaaccctgatcaaccaaca |
504 |
Q |
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| T |
12889262 |
cttgaacttgttacattttttactaacttcgcattttcctccatatcgatacatgcggctaacctaatgggatcatcaaaacaacattgatcaaccaaca |
12889361 |
T |
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| Q |
505 |
aaagacactacaatttcaaaattatgactttttattcggcttacatttcatcaaatctgttttgattgtcactgcttgatgtcc |
588 |
Q |
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| T |
12889362 |
aaagacactacaatttcaaaattatgactttttattcggcttacatttcatcaattctgttttgattgtcactgcttgatgtcc |
12889445 |
T |
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