View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7787_high_3 (Length: 526)
Name: NF7787_high_3
Description: NF7787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7787_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 2 - 481
Target Start/End: Complemental strand, 35905291 - 35904812
Alignment:
| Q |
2 |
gcaaagtgaatacaccgcaaagttacaaattacaaaaacagtagcaacttgttctttaatctccatggatgactatttctctttaatctctactcacgag |
101 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905291 |
gcaaaatgaatacatcgtaaagttacaaattacaaaaacagtagcaacttgttctttaatctccatggatgactatttctctttaatctctactcacgag |
35905192 |
T |
|
| Q |
102 |
ctctttaaagagaacattttctagaacaagcaaatctaagctgcaaaaacatgttaaatttgcctaacctcaacacaaaggaaattacaaatagttgttt |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35905191 |
ctctttaaagaggacattttctagaacaagcaaatctaagctgcaaaaacatgctaaatttgcctaacctcaacacaaaggaaattacaaatagttgttt |
35905092 |
T |
|
| Q |
202 |
aaactaaacaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatgaaaaaagttggatatggtttagggctttgggcatccag |
301 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
35905091 |
aaactaagcaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatggaaaaagttggatatggtttgggactttgggcatccag |
35904992 |
T |
|
| Q |
302 |
ttgcatacgttgtccatgaaaattaaagatggatttttcttaagtttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
35904991 |
ttgcatacgttgtccatgaaaattaaaggtgggtttttcttaagtttgattaaagatttaaggaccatttgagttgaaaaaagatgatttttatattcaa |
35904892 |
T |
|
| Q |
402 |
gcattgaagcagcacttgcgtaaacaatggtggaaggagagagaaaacgaagacattgaataatggcatgtcctgcttta |
481 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35904891 |
gaattgaagcagcacttgcgtaaacaatggtggaaggagagagaaaacgaagacattgaataatggcatgtcctgcttta |
35904812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 2 - 482
Target Start/End: Complemental strand, 7221534 - 7221054
Alignment:
| Q |
2 |
gcaaagtgaatacaccgcaaagttacaaattacaaaaacagtagcaacttgttctttaatctccatggatgactatttctctttaatctctactcacgag |
101 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7221534 |
gcaaaatgaatacatcgtaaagttacaaattacaaaaacaatagcaacttgttctttaatctccatggatgactatttctttttaatctctactcacgag |
7221435 |
T |
|
| Q |
102 |
ctctttaaagagaacattttctagaacaagcaaatctaagctgcaaaaacatgttaaatttgcctaacctcaacacaaaggaaattacaaatagttgttt |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7221434 |
ctctttaaagaggacattttctagaacaagcaaatctaagctgcagaaacatgctaaatttgcctaacctcaacacgaaggaaattacaaatagttgttt |
7221335 |
T |
|
| Q |
202 |
aaactaaacaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatgaaaaaagttggatatggtttagggctttgggcatccag |
301 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7221334 |
aaactaagcaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatggaaaaagttggatatggtttggggctttgggcatccag |
7221235 |
T |
|
| Q |
302 |
ttgcatacgttgtccatgaaaattaaagatggatttttcttaagtttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
7221234 |
ttgcatacgttgtccatgaaaattaaagatgggtttttcttaagtttgattaaagatttaaggaccatttgagttgaaaaaagatgattattatattcaa |
7221135 |
T |
|
| Q |
402 |
gcattgaagcagcacttgcgtaaacaatggtggaaggagagagaaaacgaagacattgaataatggcatgtcctgctttaa |
482 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7221134 |
gaattgaagcagcacttgcgtaaacaatggtggaaggagagagaaaacgaagacattgaataatggcatgtcctgctttaa |
7221054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 2 - 482
Target Start/End: Complemental strand, 14746716 - 14746238
Alignment:
| Q |
2 |
gcaaagtgaatacaccgcaaagttacaaattacaaaaacagtagcaacttgttctttaatctccatggatgactatttctctttaatctctactcacgag |
101 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14746716 |
gcaaaatgaatacatcgtaaagttacaaattacaaaaacaatagcaacttgttctttaatctccatggatgactatttctttttaatctctactcacgag |
14746617 |
T |
|
| Q |
102 |
ctctttaaagagaacattttctagaacaagcaaatctaagctgcaaaaacatgttaaatttgcctaacctcaacacaaaggaaattacaaatagttgttt |
201 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14746616 |
ctctttaaagaggacattttcta--acaagcaaatctaagctgcagaaacatgctaaatttgcctaaactcaacacaaaggaaattacaaatagttgttt |
14746519 |
T |
|
| Q |
202 |
aaactaaacaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatgaaaaaagttggatatggtttagggctttgggcatccag |
301 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14746518 |
aaactaagcaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatggaaaaagttggatatggtttggggctttgggcatccag |
14746419 |
T |
|
| Q |
302 |
ttgcatacgttgtccatgaaaattaaagatggatttttcttaagtttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14746418 |
ttgcatacgttgtccatgaaaattaaagatggttttttcttaagtttgattaaagatttaaggaccatttgagttgaaaaaagatgattcttatattcaa |
14746319 |
T |
|
| Q |
402 |
gcattgaagcagcacttgcgtaaacaatggtggaaggagagagaaaacgaagacattgaataatggcatgtcctgctttaa |
482 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14746318 |
gaattgaagcagcacttgcgtaaacaatggtggaaggagagagaaaacgaagacattgaataatggcatgtcctgctttaa |
14746238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Complemental strand, 46138276 - 46137803
Alignment:
| Q |
10 |
aatacaccgcaaagttacaaattacaaaaa-cagtagcaacttgttctttaatctccatggatgactatttctctttaatctctactcacgagctcttta |
108 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46138276 |
aatacatcgtaaagttacaaattacaaaaaacagtagcaacttgttctttaatctctatggatgactatttctctttaatctctactcacgagctcttta |
46138177 |
T |
|
| Q |
109 |
aagagaacattttctagaacaagcaaatctaagctgcaaaaacatgttaaatttgcctaacctcaacacaaaggaaattacaaatagttgtttaaactaa |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46138176 |
aagaggacattttctagaacaagcaaatctaagctgcataaacatgctaaatttgcctaacctcaacacaaaggaaattacaaatagttgtttaaactaa |
46138077 |
T |
|
| Q |
209 |
acaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatgaaaaaagttggatatggtttagggctttgggcatccagttgcata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
46138076 |
gcaactttagtttaaaatttatggaagagtggatctcaataaaactctgccaatggaaaaagttggatatggattggggctttgggcatccagttgcata |
46137977 |
T |
|
| Q |
309 |
cgttgtccatgaaaattaaagatggatttttcttaagtttgattaaagatttaaggatcatttgagttgaaaaaagatgattcttatattcaagcattga |
408 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46137976 |
cgttgcccatgaaaattaaatatgagtttttcttaagtttgattaaagatttaaggaccatttgagttgaaaaaagatgattcttatattcaagaattga |
46137877 |
T |
|
| Q |
409 |
agcagcacttgcgtaaacaatggtggaaggagagagaaaacgaagacattgaataatggcatgtcctgctttaa |
482 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46137876 |
agcagcacttgcgtaaacaatggtggtaggagagagaaaacgaagacattgaataatgacatgtcctgctttaa |
46137803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University