View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7787_low_1 (Length: 694)
Name: NF7787_low_1
Description: NF7787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7787_low_1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 694
Target Start/End: Original strand, 1743129 - 1743805
Alignment:
| Q |
18 |
aagaaactcatctgatataaaagaatttgacaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggt |
117 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||| |
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| T |
1743129 |
aagaaactcatccgatataaaagaatttgataaatcaatagcatttaatcttttcaagctcacgaatgaatcgatcaaatccaagttaataggtaaggga |
1743228 |
T |
|
| Q |
118 |
gtcaaaccaggtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggata |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
1743229 |
gtcaaaccaggtccatgtattcttttcttttcgatgttaaaagaaatggaagacaaacttggcctcattcggatagcagaagcaattccatcttgggata |
1743328 |
T |
|
| Q |
218 |
tcttgaaacattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatc |
317 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
1743329 |
tcttgaagcattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagagatttatcagtgatcaagtgattaccagaaagatc |
1743428 |
T |
|
| Q |
318 |
gatcctgcgcagattctcaagcatggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaat |
417 |
Q |
| |
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|||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1743429 |
gatcttgcacagattctcaagcatggaagacagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaat |
1743528 |
T |
|
| Q |
418 |
gggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctc |
517 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743529 |
ggaaagcaataagctatcactaccagatggctatcgcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctc |
1743628 |
T |
|
| Q |
518 |
gcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcacc |
617 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743629 |
gcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcacc |
1743728 |
T |
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| Q |
618 |
attgaagtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtggaat |
694 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
1743729 |
attgaagtgactaaaatctatggctttgagccttaaaaatctcgagagtagccgagaaaggaatagaatagtggaat |
1743805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 691
Target Start/End: Complemental strand, 2007253 - 2006580
Alignment:
| Q |
18 |
aagaaactcatctgatataaaagaatttgacaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggt |
117 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
2007253 |
aagaaactcatccgatataaaggaatttgacaaatcaatagcttttaatctcttcaagctcacgaatgaatcgatcaaatccaagttaataggtaggggt |
2007154 |
T |
|
| Q |
118 |
gtcaaaccaggtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggata |
217 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| || || |||| |||||||||| |||||||||| ||| ||||||||||| ||||||||| |
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| T |
2007153 |
gtcaaaccaggtccatgtcttcttttcttttcaatgttaaaggatatcgaagccaaacttggcatcattcggatcgcagaagcaattccaacttgggata |
2007054 |
T |
|
| Q |
218 |
tcttgaaacattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatc |
317 |
Q |
| |
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| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||| || | ||||||||||| |||||||| |
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| T |
2007053 |
ttttgaaacattggaagaataaaatttcttccagtgatctacagttctggcatagagacaaaagggatttatcggtggttaagtgattaccagaaagatc |
2006954 |
T |
|
| Q |
318 |
gatcctgcgcagattctcaagcatggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaat |
417 |
Q |
| |
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|| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2006953 |
aattttgcgcagattctcgagcatggaagattaccttattaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaat |
2006854 |
T |
|
| Q |
418 |
gggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctc |
517 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
2006853 |
ggaaagcaataagctatcactaccagatggctatcgcaaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctc |
2006754 |
T |
|
| Q |
518 |
gcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcacc |
617 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||| | | |||| |||||||| |
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| T |
2006753 |
gcaatccatcaacaggaactgttctctggttggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatgaagcaagccttcaagttcacc |
2006654 |
T |
|
| Q |
618 |
attgaagtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtgg |
691 |
Q |
| |
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||||||||| |||||||||| ||||||||| |||||||||| | |||||||||||| ||||||| |||||||| |
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| T |
2006653 |
attgaagtggctaaaatctaagactttgagccttaaaaatcccaagagtagccgaggaaggaatggaacagtgg |
2006580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 1498685 - 1498475
Alignment:
| Q |
34 |
ataaaagaatttgacaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccat |
133 |
Q |
| |
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|||||||| ||||| ||| ||||||| ||||||| || || || ||||||||||| |||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
1498685 |
ataaaagagtttgagaaaccaatagcttttaatcattttaaactagcgaatgagtcagtcaaatccaatttaataggtaggggtttcaatccaggtccat |
1498586 |
T |
|
| Q |
134 |
gtattcttttcttttcaatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaa |
233 |
Q |
| |
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||| |||||||||||||| |||||||||||||||| |||||| || | ||| ||| ||| || ||| ||| |||||| |||||| |||||| ||| |
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| T |
1498585 |
gtagtcttttcttttcaacgttaaaagaaatggaacccaaactaggaattattttgattgcacaaacaaggccaacttgggttatcttaaaacatgtgaa |
1498486 |
T |
|
| Q |
234 |
gaatgaaattt |
244 |
Q |
| |
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||||||||||| |
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| T |
1498485 |
gaatgaaattt |
1498475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 647
Target Start/End: Complemental strand, 1498419 - 1498323
Alignment:
| Q |
551 |
aaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgag |
647 |
Q |
| |
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||||||||| ||||| |||||||| | ||||| | ||||||||||||| | | ||||||||| ||| ||||||| |||| |||||||||||||| |
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| T |
1498419 |
aaagattaaccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctatgactttgag |
1498323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 374024 - 373967
Alignment:
| Q |
50 |
aatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaat |
107 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| | ||||||| ||||||||| |
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|
| T |
374024 |
aatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaat |
373967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 512 - 552
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
512 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
552 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||| |
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| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 44577603 - 44577538
Alignment:
| Q |
561 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
626 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
44577538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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