View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7787_low_7 (Length: 255)

Name: NF7787_low_7
Description: NF7787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7787_low_7
NF7787_low_7
[»] chr7 (3 HSPs)
chr7 (25-241)||(9353287-9353501)
chr7 (115-174)||(18847429-18847488)
chr7 (125-173)||(19612656-19612704)
[»] chr1 (3 HSPs)
chr1 (109-174)||(37046995-37047060)
chr1 (109-166)||(39714779-39714836)
chr1 (109-174)||(3334779-3334844)
[»] chr5 (1 HSPs)
chr5 (109-159)||(33025498-33025548)
[»] chr4 (1 HSPs)
chr4 (132-174)||(20832541-20832583)
[»] chr3 (1 HSPs)
chr3 (132-173)||(55063756-55063797)
[»] chr2 (1 HSPs)
chr2 (109-174)||(43963989-43964054)
[»] chr8 (1 HSPs)
chr8 (110-174)||(22268935-22268999)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 9353287 - 9353501
Alignment:
Q  25 taatctcattctttatttgcnnnnnnnacatttaaatcccgagctctgtatgaatcaaataactcattggaattgaaactgggtgaatcaaacttgagtt 124  Q
    ||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9353287 taatctcattctttatttgcggggggcccatttaaatcccgagctctgaatgaatcaaataactcattggaattgaaactgggtgaatcaaacttgagtt 9353386  T
Q  125 cttgagtggagaacactctaagatcccaagccaacaccactagaccaaccagatacaagaacttatataaaatgtatgagccacctcgaacttactccat 224  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  9353387 cttgagtggagaacactcta--atcccaagccaacaccagtagaccaaccaggtacaagaacttatataaaatctatgagccacctcgaacttactccat 9353484  T
Q  225 caatggttcatggttct 241  Q
    |||||||||||||||||    
T  9353485 caatggttcatggttct 9353501  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 18847429 - 18847488
Alignment:
Q  115 aacttgagttcttgagtggagaacactctaagatcccaagccaacaccactagaccaacc 174  Q
    |||||||| ||||||| |||| |||||| |||||| |||||||||||||| || ||||||    
T  18847429 aacttgagatcttgagaggagcacactcgaagatctcaagccaacaccaccaggccaacc 18847488  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 19612656 - 19612704
Alignment:
Q  125 cttgagtggagaacactctaagatcccaagccaacaccactagaccaac 173  Q
    |||||| |||| |||||  ||||||||||||||||||||||| ||||||    
T  19612656 cttgagaggagcacacttcaagatcccaagccaacaccactaaaccaac 19612704  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 37047060 - 37046995
Alignment:
Q  109 gaatcaaacttgagttcttgagtggagaacactctaagatcccaagccaacaccactagaccaacc 174  Q
    ||||||||| ||||  |||||| |||| |||||| ||| ||||||||||||||||| |||||||||    
T  37047060 gaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccagaccaacc 37046995  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 39714779 - 39714836
Alignment:
Q  109 gaatcaaacttgagttcttgagtggagaacactctaagatcccaagccaacaccacta 166  Q
    ||||||||||||||  |||||| |||| |||||| |||||||||||||||| ||||||    
T  39714779 gaatcaaacttgagaccttgagaggagcacactccaagatcccaagccaacgccacta 39714836  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 3334844 - 3334779
Alignment:
Q  109 gaatcaaacttgagttcttgagtggagaacactctaagatcccaagccaacaccactagaccaacc 174  Q
    ||||| ||||||||  ||||||  ||| ||||||||||||| |||||||||| |||| ||||||||    
T  3334844 gaatcgaacttgagaccttgagaagagcacactctaagatctcaagccaacatcactggaccaacc 3334779  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 33025548 - 33025498
Alignment:
Q  109 gaatcaaacttgagttcttgagtggagaacactctaagatcccaagccaac 159  Q
    |||||||| ||||| ||||||| |||| |||||| ||||||||||||||||    
T  33025548 gaatcaaagttgagatcttgagaggagcacactccaagatcccaagccaac 33025498  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 20832583 - 20832541
Alignment:
Q  132 ggagaacactctaagatcccaagccaacaccactagaccaacc 174  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||    
T  20832583 ggagaacactccaaggtcccaagccaacgccactagaccaacc 20832541  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 55063756 - 55063797
Alignment:
Q  132 ggagaacactctaagatcccaagccaacaccactagaccaac 173  Q
    |||| |||||||||| |||||||| |||||||||||||||||    
T  55063756 ggagcacactctaaggtcccaagctaacaccactagaccaac 55063797  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 43963989 - 43964054
Alignment:
Q  109 gaatcaaacttgagttcttgagtggagaacactctaagatcccaagccaacaccactagaccaacc 174  Q
    ||||||||| ||||  |||||| |||| |||||| ||| |||||| ||||||| ||||||||||||    
T  43963989 gaatcaaacatgagaccttgagaggagcacactccaaggtcccaaaccaacactactagaccaacc 43964054  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 22268935 - 22268999
Alignment:
Q  110 aatcaaacttgagttcttgagtggagaacactctaagatcccaagccaacaccactagaccaacc 174  Q
    |||||||||||||  ||||||  ||| |||||| ||| ||||||||||||||||| || ||||||    
T  22268935 aatcaaacttgagaccttgagaagagcacactccaaggtcccaagccaacaccaccaggccaacc 22268999  T

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