View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7787_low_8 (Length: 227)
Name: NF7787_low_8
Description: NF7787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7787_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 29934235 - 29934430
Alignment:
| Q |
16 |
atgaaaacatatttatcacaattataatgaaaatatggcagacttacagaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29934235 |
atgaaaacatatttatcacaattataatgaaaatatggcagacttacagaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacag |
29934334 |
T |
|
| Q |
116 |
taacaacatccttaagagttgcatcgtttggaagtctccaataatcaatagcaatagcaggagcaggtacattttcaactttaccactttcaattg |
211 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29934335 |
tgacaacatccttaagagttgcatcatttggaagtctccaataatcaatagcaatagcaggagcaggtacattttcaactttaccactttcaattg |
29934430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 29931559 - 29931706
Alignment:
| Q |
64 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtaacaacatccttaagagttgcatcgtttggaagtctccaataatcaa |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
29931559 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctccaataatcaa |
29931658 |
T |
|
| Q |
164 |
tagcaatagcaggagcaggtacattttcaactttaccactttcaattg |
211 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29931659 |
ttgcaatagcaggagcaggtacattttcaactttaccactctcaattg |
29931706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 37469832 - 37469718
Alignment:
| Q |
79 |
acatccctatgatgagcctcatcagcacgaataacagtaacaacatccttaagagttgcatcgtttggaagtctccaataatcaatagcaatagcaggag |
178 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| || || | |||||| || | | ||||| || ||||| |||||||| || || ||||| ||||||| |
|
|
| T |
37469832 |
acatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctccaatagtctattgcaatggcaggag |
37469733 |
T |
|
| Q |
179 |
caggtacattttcaa |
193 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
37469732 |
caggaacattttcaa |
37469718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University