View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7788_low_2 (Length: 287)
Name: NF7788_low_2
Description: NF7788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7788_low_2 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0020 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 82 - 287
Target Start/End: Complemental strand, 163755 - 163551
Alignment:
| Q |
82 |
taaatgaagtgtttaaagttcaaatccaacccttacatattttatgcattgtccaaaatcatttattttaaaacaaatgaaacacacaaannnnnnnatt |
181 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
163755 |
taaatgaaatgtttaaggttcaaatccaacccttacatattttatgcattgtccaaaatcatttattttaaaacaaatgaaacacacaa-tttttttatt |
163657 |
T |
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| Q |
182 |
taaaaaattgatatccgactcaaaaatcgattaatccaaaaattcaatttcatcctccaattacaaaatcccatttaaaaccaagagagaagaaaaaaca |
281 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
163656 |
aaaaaaattgatattcgactcaaaaatcgactaatccaaaaattcaatttcatcctccaattacaaaatcccatttaaaaccaagagagaagaaaaaaca |
163557 |
T |
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| Q |
282 |
cagtac |
287 |
Q |
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|||||| |
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| T |
163556 |
cagtac |
163551 |
T |
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