View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7788_low_3 (Length: 221)
Name: NF7788_low_3
Description: NF7788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7788_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 15832722 - 15832539
Alignment:
| Q |
11 |
gaataatatcatcagggagatcactaattcgatctattaataatggttttgatttggcattgttttcttgttcttgttctatttgagctannnnnnnacg |
110 |
Q |
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| T |
15832722 |
gaataatatcatcagggagatcactaattcgatctattaat---ggttttgatttggcattgttttcttgttcttgttctattt---------ttttacg |
15832635 |
T |
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| Q |
111 |
ttttgcagatcttgtttccattgcatgtaattgcatcatatccctatgccttttttctattgttatattcattcatgaaatgaaacaagtcctttt |
206 |
Q |
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| T |
15832634 |
ttttgcagatcttgtttccattgcatgtaattgcatcatatccctatgccttttttctattgttatattcattcatgaaatgaaacaagtcctttt |
15832539 |
T |
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