View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7788_low_4 (Length: 206)

Name: NF7788_low_4
Description: NF7788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7788_low_4
NF7788_low_4
[»] chr5 (3 HSPs)
chr5 (17-188)||(34645811-34645982)
chr5 (18-188)||(34665505-34665675)
chr5 (20-180)||(19649566-19649726)
[»] chr4 (2 HSPs)
chr4 (17-187)||(45645007-45645178)
chr4 (88-146)||(1390136-1390194)
[»] chr6 (1 HSPs)
chr6 (17-187)||(34302470-34302640)
[»] chr8 (4 HSPs)
chr8 (17-186)||(14182758-14182927)
chr8 (13-186)||(40717517-40717690)
chr8 (20-186)||(14191698-14191864)
chr8 (20-186)||(14200712-14200878)
[»] chr2 (3 HSPs)
chr2 (23-132)||(28402694-28402803)
chr2 (23-132)||(45396682-45396791)
chr2 (23-132)||(44491536-44491645)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 34645982 - 34645811
Alignment:
Q  17 gaacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34645982 gaacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaa 34645883  T
Q  117 tgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagataac 188  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34645882 tgtcactacctgtatcagcaataccatatatcttagttggaggggtaccaactgaataggtcatgagataac 34645811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 34665675 - 34665505
Alignment:
Q  18 aacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34665675 aacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcacattgaagccaaacaat 34665576  T
Q  118 gtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagataac 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665575 gtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagataac 34665505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 19649566 - 19649726
Alignment:
Q  20 caaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgt 119  Q
    |||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||    
T  19649566 caaggaatatttttgtaacttgatgattttgaaggattaaatataggagtggtttgcttgtagcattgttcacaaggcttacattgaagccaaacaatgt 19649665  T
Q  120 cactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcat 180  Q
    |||||||||||||| ||| ||| ||||  |||   ||||| |||||||| ||||| |||||    
T  19649666 cactacctgtatcaacaacaccatatacattaaacggaggtgtaccaaccgaataagtcat 19649726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 45645178 - 45645007
Alignment:
Q  17 gaacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaa 116  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45645178 gaacaaggaatgtttatgtaacttgatgattttgatggattaaacttaggagtggtttggttgtaacattgtttacaaggctcgcattgaagccaaacaa 45645079  T
Q  117 tgtcactacctgtatcagcaataccgtat-atcttagttggaggggtaccaactgaataggtcatgagataa 187  Q
    ||||||||||||||||   |||||| ||| | ||||  ||| |||||||||||| ||||| |||||||||||    
T  45645078 tgtcactacctgtatcgataataccatataaacttaaatggtggggtaccaactcaatagttcatgagataa 45645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 1390194 - 1390136
Alignment:
Q  88 ttcacaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaataccgtata 146  Q
    |||||||||||  |||||||||||||| |||||||||||||||||| ||||||| ||||    
T  1390194 ttcacaaggcttacattgaagccaaaccatgtcactacctgtatcaacaataccatata 1390136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 34302640 - 34302470
Alignment:
Q  17 gaacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaa 116  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  34302640 gaacaagaaatgtttttgtaactcgatgactttgatggattaaacttaggagtggtttgattgtaacattgttcacaaggctcgcattgtagccatacaa 34302541  T
Q  117 tgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagataa 187  Q
    ||||||||||||||||  ||||||| |||  |||| |||| ||||| |||||||||||| |||||| ||||    
T  34302540 tgtcactacctgtatcgacaataccatatgacttaattggtggggtgccaactgaatagctcatgatataa 34302470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 14182927 - 14182758
Alignment:
Q  17 gaacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaa 116  Q
    ||||| ||||||||||||||| | || ||||||||||| |||||  | ||||| ||||| |||||||||| ||  |||||||||||||||||||||||||    
T  14182927 gaacatggaatgtttttgtaagttgacgattttgatggtttaaacttaggagttgtttgattgtaacattctttgcaaggctcgcattgaagccaaacaa 14182828  T
Q  117 tgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagata 186  Q
    |||||||||||||||||||||| || |||| ||||  ||| |||||||||||||||||||||||||||||    
T  14182827 tgtcactacctgtatcagcaatgccatataacttaaatggtggggtaccaactgaataggtcatgagata 14182758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 40717690 - 40717517
Alignment:
Q  13 agatgaacaaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaa 112  Q
    ||||||||| || || ||||||||| | |||||||||||||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40717690 agatgaacatgggatatttttgtaagttgatgattttgatggtttaaacttaggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaa 40717591  T
Q  113 acaatgtcactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagata 186  Q
    ||||||||||||||||| ||| |||| || |||| ||||  ||| ||| |||||| |||||||||||| |||||    
T  40717590 acaatgtcactacctgtgtcaacaatgccatataacttaaatggtgggctaccaattgaataggtcatcagata 40717517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 14191864 - 14191698
Alignment:
Q  20 caaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgt 119  Q
    |||||||||||||||||||| || ||||| || |||||||| || |||||||||||||||||||||| || ||||||||| ||||||||||||||||| |    
T  14191864 caaggaatgtttttgtaacttgacgatttcgacggattaaacataggagtggtttggttgtaacattcttgacaaggctcacattgaagccaaacaatat 14191765  T
Q  120 cactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagata 186  Q
    ||||||| |||||| ||||||| |||| ||||  ||| || |||||||||||||||||||| |||||    
T  14191764 cactaccggtatcaacaataccatataacttaaatggtggtgtaccaactgaataggtcattagata 14191698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 14200878 - 14200712
Alignment:
Q  20 caaggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgt 119  Q
    ||||| ||||||| |||||| ||||||  ||| || | ||| || || ||| |||||  ||||||||||| ||||||||| |||||||||||||||| ||    
T  14200878 caaggtatgttttggtaacttgatgataatgaagggtcaaatataggtgtgatttgggggtaacattgtttacaaggctcacattgaagccaaacaaggt 14200779  T
Q  120 cactacctgtatcagcaataccgtatatcttagttggaggggtaccaactgaataggtcatgagata 186  Q
    |||||||||||||| |||  ||  ||| ||||  ||| || ||||||| ||||||  ||||||||||    
T  14200778 cactacctgtatcaacaaagccaaataccttaaatggtggagtaccaattgaataactcatgagata 14200712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 28402803 - 28402694
Alignment:
Q  23 ggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgtcac 122  Q
    ||||| ||||||||||| || |||||||| |||||||| || |||| |||||| ||| |||||   | |||||||| ||||||||||||||| |||| ||    
T  28402803 ggaatatttttgtaacttgaagattttgaaggattaaatataggagaggtttgattgaaacatgtatgacaaggctggcattgaagccaaactatgttac 28402704  T
Q  123 tacctgtatc 132  Q
    ||||||||||    
T  28402703 tacctgtatc 28402694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 45396682 - 45396791
Alignment:
Q  23 ggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgtcac 122  Q
    ||||| ||||||||||| || |||||||| |||||||| || |||| |||||| ||| |||||   | |||||||| ||||||||||||||| |||| ||    
T  45396682 ggaatatttttgtaacttgaagattttgaaggattaaatataggagaggtttgattgaaacatgtattacaaggctggcattgaagccaaactatgttac 45396781  T
Q  123 tacctgtatc 132  Q
    ||||||||||    
T  45396782 tacctgtatc 45396791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 44491536 - 44491645
Alignment:
Q  23 ggaatgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgtcac 122  Q
    |||||| |||||||||| || |||||||| |||||||| || || | |||||| |||||||||   |  ||||||| ||||||||||||||| | |||||    
T  44491536 ggaatgattttgtaacttgaagattttgaaggattaaatataggcgaggtttgcttgtaacatatattgcaaggcttgcattgaagccaaactaagtcac 44491635  T
Q  123 tacctgtatc 132  Q
    ||||||||||    
T  44491636 tacctgtatc 44491645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University