View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7789_high_1 (Length: 443)
Name: NF7789_high_1
Description: NF7789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7789_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 37817409 - 37817834
Alignment:
| Q |
1 |
agtttcgtggtaggatacacttatctaatagattaatcagattgctaaaaatgtaggcctaattttttagataaccccatttaaaacagtcatgtttgca |
100 |
Q |
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| T |
37817409 |
agttccgtggtaggatacacttatctaatagattaatcagattgctaaaaatgtaggcctaattttttagataaccccatttaaaacagtcatgtttgca |
37817508 |
T |
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| Q |
101 |
catagaaagaccatgccccgacacactgaatttctcaactttctgcaactattttgttgttttgtgaagtagtggctaggctagatattggttcaaagta |
200 |
Q |
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| T |
37817509 |
catagaaagaccatgccccgacacactgaatttctcaactttctgcaactattttgttgttttgtgaagtagtggctaggctagatattggttcaaagta |
37817608 |
T |
|
| Q |
201 |
ttgtgttcaaaatattatcatatttcaagtgacctttaggtaagtaatgtctattaggaatttatacctaattagcaaaaaatataaacataactatgcg |
300 |
Q |
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| T |
37817609 |
ttgtgttcaaaatattatcatatttcaagtgacctttaggtaagtaatgtctattaggaatttatacctaattagcaaaaaatataaacataactatgcg |
37817708 |
T |
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| Q |
301 |
aaaccactataggcgtgtgagccccaaatttagcatggtcctcctattcctagacttgtctctaattgagtgatcaaatttcatccaaagtgtttattca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37817709 |
aaaccactataggcgtgtgagccccaaatttagcatggtcctcctattcctagacttgtctctaattgagtgatcaaatttcatccaaagtgtttattca |
37817808 |
T |
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| Q |
401 |
actatagctctatttagtactcattg |
426 |
Q |
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| T |
37817809 |
actatagctctatttagtactcattg |
37817834 |
T |
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