View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7789_low_1 (Length: 692)
Name: NF7789_low_1
Description: NF7789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7789_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 24113984 - 24113644
Alignment:
| Q |
1 |
gaccaagaaaggacgtggctgtggtttgggaagggggaaggccgcgaaggattgtgcatgaatgaaaggaagaggagaaaatatgtccgccttcacatgt |
100 |
Q |
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| T |
24113984 |
gaccaagaaaggacgtggctgtggtttgggaggggggaaggccgcgaaggattgtgcgtgaatgaaaggaagaggagaaaatatgcccgccttcacatgt |
24113885 |
T |
|
| Q |
101 |
tgtatttccacactaggcctaagcatcttaagtctagtagagaaactgaaactacctttgtctgcactagacatgaggaaggttttatgacataagagaa |
200 |
Q |
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| T |
24113884 |
tgtatttccacactaggccaaagcatcttaagtctagtagagaaactgaaactacctttgtctgcactatacatgaggaaggttttatgacataagagaa |
24113785 |
T |
|
| Q |
201 |
catgaacattagaatttgcaccataaactcctacacaaacttgaagttaatttgaggactctaaccaagtcaacgtaccggaaaaattattcaaactgtt |
300 |
Q |
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| T |
24113784 |
catgaacattagaatttgcaccataaactcctacacaaacttgaagttaatttgaggactctaaccaagtcaacgtaccggaaaaattattcaaattgtt |
24113685 |
T |
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| Q |
301 |
tttaggaaaaataaaatttgttcatattgtcgtttaactta |
341 |
Q |
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| T |
24113684 |
tttaggaaaaataaaatttgttcatattgtcgtttaactta |
24113644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 356 - 676
Target Start/End: Complemental strand, 24113290 - 24112969
Alignment:
| Q |
356 |
agactacaataatgtttaagaatagattaaaagatatgcattgtcagtgtaaaattggtttacacttgcaaccaatcacaaatcgtcaacacaacctaca |
455 |
Q |
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| T |
24113290 |
agactacaataatgtttaagaatagattaaaagatatgcattgtcagtgtaaaattgttttacacttacaaccaatcacaaatcgtcaacacaacataca |
24113191 |
T |
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| Q |
456 |
tatctaccttttactttattcttattaaaaa-gttcaaacatgatgcagtaacatatcacttaaactcttaaaataatcatggagggtgcgaaaagaagt |
554 |
Q |
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| T |
24113190 |
tatctaccttttactttattcttattaaaaaagttcaaacatgatgtagcaacatataacttaaactcttaaaataatcatggagggtgcgaaaagaagt |
24113091 |
T |
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| Q |
555 |
taacgtaaaccctaaaactcttataggcagttaagagttgggcctaaggcccatatcaaaatatccaaagtcaaaacaacccctagggtttacacagttc |
654 |
Q |
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| T |
24113090 |
taacgtaaaccctaaaactcttatgggcagttaagagttgggcctaaggcccatatcaaattatccaaagtcaaaacaatccctagggtttacacagttc |
24112991 |
T |
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| Q |
655 |
tataaatacctaaatttcattt |
676 |
Q |
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|||||||||||||||||||||| |
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| T |
24112990 |
tataaatacctaaatttcattt |
24112969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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