View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7789_low_3 (Length: 411)

Name: NF7789_low_3
Description: NF7789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7789_low_3
NF7789_low_3
[»] chr7 (22 HSPs)
chr7 (1-388)||(10325011-10325397)
chr7 (107-388)||(36677503-36677784)
chr7 (32-383)||(20492291-20492645)
chr7 (95-281)||(12980606-12980790)
chr7 (84-375)||(31956950-31957241)
chr7 (230-386)||(9892699-9892855)
chr7 (230-388)||(9451469-9451627)
chr7 (230-354)||(37886050-37886174)
chr7 (254-383)||(17852377-17852506)
chr7 (187-278)||(21118361-21118452)
chr7 (327-375)||(25778249-25778297)
chr7 (256-383)||(12129526-12129653)
chr7 (221-278)||(40901859-40901916)
chr7 (204-277)||(42029870-42029943)
chr7 (230-278)||(23820532-23820580)
chr7 (232-290)||(717503-717561)
chr7 (232-290)||(8541027-8541085)
chr7 (328-373)||(12980813-12980858)
chr7 (232-268)||(5086604-5086640)
chr7 (232-268)||(5609531-5609567)
chr7 (315-382)||(20528973-20529040)
chr7 (232-288)||(29526837-29526893)
[»] chr1 (25 HSPs)
chr1 (19-388)||(3601162-3601534)
chr1 (33-388)||(2114168-2114523)
chr1 (100-388)||(17321754-17322042)
chr1 (1-383)||(32544293-32544664)
chr1 (100-388)||(10395302-10395590)
chr1 (243-383)||(39840060-39840200)
chr1 (109-375)||(27877589-27877855)
chr1 (230-388)||(12539125-12539283)
chr1 (187-288)||(44839901-44840002)
chr1 (202-287)||(51080717-51080802)
chr1 (230-288)||(11351641-11351699)
chr1 (230-278)||(2536536-2536584)
chr1 (232-291)||(33315170-33315229)
chr1 (230-276)||(6784287-6784333)
chr1 (109-291)||(39648398-39648580)
chr1 (327-380)||(25396209-25396262)
chr1 (234-278)||(5811388-5811432)
chr1 (236-288)||(21515218-21515270)
chr1 (306-382)||(33315231-33315307)
chr1 (48-136)||(39839894-39839982)
chr1 (232-278)||(22161760-22161806)
chr1 (232-268)||(11644758-11644794)
chr1 (232-268)||(21182647-21182683)
chr1 (232-288)||(26418789-26418845)
chr1 (232-288)||(32108435-32108491)
[»] chr4 (21 HSPs)
chr4 (84-386)||(6969472-6969777)
chr4 (24-370)||(17283484-17283829)
chr4 (21-357)||(37836384-37836721)
chr4 (97-383)||(1479180-1479466)
chr4 (109-382)||(46078347-46078619)
chr4 (230-380)||(35096917-35097067)
chr4 (109-383)||(16889030-16889303)
chr4 (19-205)||(9631750-9631936)
chr4 (208-345)||(9633045-9633182)
chr4 (164-287)||(19315935-19316058)
chr4 (109-333)||(23059340-23059564)
chr4 (232-388)||(49407019-49407175)
chr4 (234-297)||(1311155-1311218)
chr4 (220-287)||(1394124-1394191)
chr4 (232-297)||(13200849-13200914)
chr4 (230-291)||(37857011-37857072)
chr4 (340-388)||(5124524-5124572)
chr4 (232-268)||(15065914-15065950)
chr4 (232-268)||(17459409-17459445)
chr4 (230-278)||(43989312-43989360)
chr4 (232-288)||(47783000-47783056)
[»] chr2 (10 HSPs)
chr2 (98-368)||(12555323-12555593)
chr2 (97-388)||(6860378-6860670)
chr2 (109-368)||(28589916-28590175)
chr2 (109-375)||(41315822-41316088)
chr2 (230-288)||(29894365-29894423)
chr2 (230-288)||(24543222-24543280)
chr2 (270-366)||(37140588-37140684)
chr2 (230-373)||(10977766-10977909)
chr2 (230-288)||(36365049-36365107)
chr2 (202-287)||(40287062-40287147)
[»] chr3 (18 HSPs)
chr3 (72-361)||(20916261-20916543)
chr3 (72-361)||(20925223-20925505)
chr3 (109-388)||(10346428-10346706)
chr3 (230-383)||(1017575-1017728)
chr3 (100-383)||(26730820-26731103)
chr3 (202-287)||(38998888-38998973)
chr3 (109-368)||(47703699-47703958)
chr3 (232-387)||(6821689-6821844)
chr3 (185-288)||(36684869-36684972)
chr3 (230-288)||(51976769-51976827)
chr3 (202-279)||(37796586-37796663)
chr3 (232-268)||(2651829-2651865)
chr3 (232-287)||(27265809-27265864)
chr3 (230-276)||(8705721-8705767)
chr3 (230-276)||(9057608-9057654)
chr3 (232-268)||(15790052-15790088)
chr3 (232-288)||(32073608-32073664)
chr3 (230-270)||(45736475-45736515)
[»] chr8 (6 HSPs)
chr8 (72-320)||(11911376-11911625)
chr8 (19-383)||(9808665-9809029)
chr8 (187-288)||(26440772-26440873)
chr8 (109-375)||(26951397-26951663)
chr8 (109-176)||(21276544-21276611)
chr8 (197-270)||(7251082-7251155)
[»] scaffold0151 (1 HSPs)
scaffold0151 (235-388)||(21295-21448)
[»] chr5 (16 HSPs)
chr5 (101-383)||(24870310-24870592)
chr5 (109-375)||(30304709-30304975)
chr5 (100-383)||(24275121-24275404)
chr5 (100-383)||(24386809-24387092)
chr5 (197-287)||(34905551-34905641)
chr5 (110-380)||(8703449-8703716)
chr5 (230-288)||(41197400-41197458)
chr5 (113-278)||(34414-34578)
chr5 (232-301)||(14856953-14857022)
chr5 (230-291)||(29985437-29985498)
chr5 (174-375)||(33367874-33368074)
chr5 (232-268)||(11619193-11619229)
chr5 (202-263)||(32163060-32163121)
chr5 (232-268)||(8724719-8724755)
chr5 (232-268)||(13065492-13065528)
chr5 (232-288)||(30376471-30376527)
[»] chr6 (6 HSPs)
chr6 (232-287)||(19047098-19047153)
chr6 (230-388)||(942702-942860)
chr6 (230-383)||(11657643-11657796)
chr6 (230-276)||(4513081-4513127)
chr6 (232-288)||(13757545-13757601)
chr6 (232-288)||(15950809-15950865)
[»] scaffold0010 (1 HSPs)
scaffold0010 (109-375)||(255323-255588)
[»] scaffold0041 (1 HSPs)
scaffold0041 (221-278)||(48102-48159)
[»] scaffold0007 (1 HSPs)
scaffold0007 (232-268)||(234735-234771)
[»] scaffold0251 (1 HSPs)
scaffold0251 (232-268)||(2258-2294)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 10325397 - 10325011
Alignment:
Q  1 tttgctcttgcaacaaaagactggtttgcttccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttc 100  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  10325397 tttgctcttgcaaaaaaagactggtttgattccctgtgtgacatagatgtggtggaggttgtcgggatacgtacaactttggaatgggtgttggatctcc 10325298  T
Q  101 agttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgc 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10325297 agttcgacaatgtcgattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcgtatatgc 10325198  T
Q  201 ttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccca 300  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  10325197 ttgtagacaattgttacttaattgtttaaacaactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcatgagttagctca-acaacccca 10325099  T
Q  301 tttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10325098 tttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 10325011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 107 - 388
Target Start/End: Original strand, 36677503 - 36677784
Alignment:
Q  107 acaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtag 206  Q
    |||||||||||||| |||||||||||||||| ||| ||||| |||||||||||  |||| ||||||||||  ||||| |||||||||||||||| |||||    
T  36677503 acaatgtggatttttctcttgattctaaaagagttattgatcatgtaaattcaactataaatgatagtagcgagtttggttgtatcatatatgcatgtag 36677602  T
Q  207 acagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaat 306  Q
    ||| |||||| ||||||||||  |  |||||||||||||||| || || |||| ||||||| ||||| ||||| |||||||||| | | ||| |||||||    
T  36677603 acaattgttagttaatagttttcaacactctcatgtcgagttcaacagaaggcgaacgaatagggtcactcacaagttagctcatatagccctatttaat 36677702  T
Q  307 cctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    ||||| || ||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||| | ||||||| ||||    
T  36677703 cctagctcgcatgttatagatgatgttccctcatgtatttgacacattttagctaatgaaatgcaataaatttcttccttaa 36677784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 32 - 383
Target Start/End: Original strand, 20492291 - 20492645
Alignment:
Q  32 ccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggattttgctcttgattc 131  Q
    |||||||||||| |  || || ||||| ||||||| ||| |||| |||||| ||||||  | ||||| ||||| || ||| ||||||||||||| |||||    
T  20492291 ccttgtgtgacacaaatgcgggggaggctgtcgggttacatacagctttggaatgggtactagatctccagtttgataatatggattttgctctcgattc 20492390  T
Q  132 taaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagacagttgttacttaatagtttaaag 231  Q
     ||||| |||||||||| | |||||||| || ||||||||  |||  || || ||||||| |||| || ||||| || ||| ||| ||||||| ||  ||    
T  20492391 caaaagagttgttgattttataaattcacatgtagatgatgatagcgagcttggttgtattatatctgtttgtaaacggttattagttaatagattttag 20492490  T
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttata---gatg 328  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||| || ||| ||  ||| |||   ||||| |||||   ||||    
T  20492491 aactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagctcaggcagccctatccaattctaacccccatattatagttgatg 20492590  T
Q  329 atgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    || |||| ||  ||||| ||||||||||| |||||||||| |||| | |||||||    
T  20492591 atataccttcacgtatttgacacattttaactaatgaaatgcaataaatttcttc 20492645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 281
Target Start/End: Original strand, 12980606 - 12980790
Alignment:
Q  95 atcttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcat 194  Q
    |||| ||||| |||| ||||||||| ||||||||||| ||||  |||||||||| | |||||||| ||||| ||||||||||  ||||  ||||||||||    
T  12980606 atctccagtttgacagtgtggatttcgctcttgattccaaaaaagttgttgattgtataaattcacatataaatgatagtagcgagttaggttgtatcat 12980705  T
Q  195 atatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacga 281  Q
    || ||| | ||  ||||| |||  |||||| ||  ||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  12980706 atctgcatata--cagttattagctaatagatttcagaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctcacga 12980790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 84 - 375
Target Start/End: Complemental strand, 31957241 - 31956950
Alignment:
Q  84 atgggtgttggatcttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagttt 183  Q
    ||||||||| || ||||| |||||||||||||| ||||  |||||||||||||  ||||||||| | || ||||  ||| ||||||| | |||| ||| |    
T  31957241 atgggtgttagaccttcaattcgacaatgtggactttgtccttgattctaaaacagttgttgatcacgttaattttgatgtagatgacaatagtgagtat 31957142  T
Q  184 agttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagt 283  Q
     ||||||| || | |  ||||||||  |||||||  ||||||||  |||||| ||||||||| || ||||||||||||   |||||| |||| ||| |||    
T  31957141 ggttgtattatttctatttgtagacgattgttacagaatagttttcagaactatcatgtcgaattcaataggaggcaagttaatgggatcgcacacaagt 31957042  T
Q  284 tagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatga 375  Q
    || || |||    |||||| |||| ||| ||| || |||||||||||| |||||| |||||| | ||||||||| |||||||||| ||||||    
T  31957041 taactgagattgtcccattaaatcatagctcctatattatagatgatgcaccctcatgtatttggcacattttaactaatgaaatgcaatga 31956950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 386
Target Start/End: Complemental strand, 9892855 - 9892699
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    |||||||||||||||||||||||| | || ||   |||||||||| ||||||||||||||| |||| |||||| | |||||| | |||| ||| ||||||    
T  9892855 agaactctcatgtcgagtttaatatggggtaagtaaatggggtcgttcacgagttagctcatacaatcccattaattcctagcttccatattacagatga 9892756  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttcttt 386  Q
    ||  || |  | | ||   ||||||||| ||||||||||||||||| ||||||||||    
T  9892755 tgctcctttatatttttagcacattttaactaatgaaatacaatgaatttcttcttt 9892699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 9451469 - 9451627
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    ||||||||||| ||||||| || ||||| ||||| ||| |||| ||||||||||||  |||| || |||  | |||||||||  ||||| |||| |||||    
T  9451469 agaactctcatatcgagttcaacaggagacaaacaaatagggtagctcacgagttaaatcaggcagccctgtctaatcctagcccccatattattgatga 9451568  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    ||||||  | |||||| |||| |||||| |||||||||| |||| | ||||||| ||||    
T  9451569 tgtacctacatgtatttgacatattttacctaatgaaatgcaattaatttcttccttaa 9451627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 37886174 - 37886050
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    |||||||||| ||||||||| ||| ||| |||   |||  ||| | |||||||||||||||||||| ||||||||||| ||| |||||||||   |||||    
T  37886174 agaactctcaagtcgagtttgatacgagacaagttaatcaggttgttcacgagttagctcagacaatcccatttaatcatagttcccatgtttcggatga 37886075  T
Q  330 tgtaccctcgtgtattagacacatt 354  Q
    | |||||||||||||| | ||||||    
T  37886074 tataccctcgtgtatttggcacatt 37886050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 383
Target Start/End: Original strand, 17852377 - 17852506
Alignment:
Q  254 ggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacat 353  Q
    |||||||| | ||| |||| |||||||||||||||||| || ||| || ||||| |||  ||||||| || |||||||||||  | |||||| | || ||    
T  17852377 ggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatctaatcttagcccccatgtgattgatgatgtacctacatgtatttggcatat 17852476  T
Q  354 tttagctaatgaaatacaatgagtttcttc 383  Q
    |||| |||||||||| |||||| |||||||    
T  17852477 tttatctaatgaaatgcaatgattttcttc 17852506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 21118361 - 21118452
Alignment:
Q  187 tgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    ||||||||  |||||||||||||||||||    ||||||||  ||||||||||||||||||| |||||||||||| | |||| |||| ||||    
T  21118361 tgtatcatgcatgcttgtagacagttgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactca 21118452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 25778249 - 25778297
Alignment:
Q  327 tgatgtaccctcgtgtattagacacattttagctaatgaaatacaatga 375  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||    
T  25778249 tgatgtaccattgtgtattagacacattttagctaataaaatacaatga 25778297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 383
Target Start/End: Original strand, 12129526 - 12129653
Alignment:
Q  256 aggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattt 355  Q
    |||||| | ||| |||| ||||||||||||||||||  | ||  || | |||||||  ||||||| || |||||||||||  | |||||| |||| ||||    
T  12129526 aggcaagcaaatagggtagctcacgagttagctcaggtagccttatctgatcctagcccccatgtgattgatgatgtacctacatgtatttgacatattt 12129625  T
Q  356 tagctaatgaaatacaatgagtttcttc 383  Q
    || |||||||||| |||||| |||||||    
T  12129626 tatctaatgaaatgcaatgattttcttc 12129653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 40901916 - 40901859
Alignment:
Q  221 atagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    |||||||  ||||||||||||||||||| |||||||||||||| |||  |||||||||    
T  40901916 atagtttgcagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctca 40901859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 42029943 - 42029870
Alignment:
Q  204 tagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctc 277  Q
    ||||||| |||| | ||||||||| || ||||||||||| || ||||||| ||||||||  |||||||||||||    
T  42029943 tagacagatgttccataatagtttcaaaaactctcatgttgaatttaatatgaggcaaattaatggggtcgctc 42029870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 23820532 - 23820580
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    ||||||||||| ||||||| |||||||||||| | ||||||||||||||    
T  23820532 agaactctcatatcgagttcaataggaggcaagccaatggggtcgctca 23820580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 717503 - 717561
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctca 290  Q
    ||||||||||| |||||||||||||| ||| | |||||| || || |||||||||||||    
T  717503 aactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctca 717561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 8541085 - 8541027
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctca 290  Q
    |||||||||||| |||||||||||||| ||   |||||||| ||| |||||||||||||    
T  8541085 aactctcatgtcaagtttaataggaggtaagataatggggttgcttacgagttagctca 8541027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 12980813 - 12980858
Alignment:
Q  328 gatgtaccctcgtgtattagacacattttagctaatgaaatacaat 373  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||    
T  12980813 gatgtatcctcatgtatttgacacattttaactaatgaaatacaat 12980858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 5086604 - 5086640
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  5086604 aactctcatgtcgagtttattaggaggcaagcgaatg 5086640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 5609567 - 5609531
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  5609567 aactctcatgtcgagtttattaggaggcaagcgaatg 5609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 20529040 - 20528973
Alignment:
Q  315 ccatgttatagatgatgtaccctcgtgta-ttagacacattttagctaatgaaatacaatgagtttctt 382  Q
    ||||||||||||||||||||| || |||| ||||| | |||||| |||||||||||||| || ||||||    
T  20529040 ccatgttatagatgatgtaccttcatgtatttaga-atattttaactaatgaaatacaacgactttctt 20528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 29526837 - 29526893
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||| | |||| ||| ||||| || ||||||    
T  29526837 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagct 29526893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 3601534 - 3601162
Alignment:
Q  19 gactggtttgcttccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggatt 118  Q
    ||||| |||||| |||||||||||| |  ||||| ||||||||||| | ||| ||||||||||| |||||| |  |||||   ||| || || ||||| |    
T  3601534 gactgatttgctcccttgtgtgacacaaatgtgggggaggttgtcgagttacatacaactttggaatgggtatcagatctcaggtttgataacgtggact 3601435  T
Q  119 ttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagacagttgttact 218  Q
    ||||||||||||| ||||| |||||||||| ||| |||||| || ||||||||  |||  || || |||||||||||| |||||||| ||| || ||| |    
T  3601434 ttgctcttgattccaaaagagttgttgattttgtgaattcatatgtagatgatgatagcaaggttggttgtatcatatttgcttgtaaacaattattagt 3601335  T
Q  219 taatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccat 318  Q
    |||||| ||  ||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||| ||||||||| || ||||| |||  |||||    
T  3601334 taatagatttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagcttagacaaccctatctaatcatagtccccat 3601235  T
Q  319 gttata---gatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
     | | |   ||||||||||| || |||||| |||| ||||||||||||| ||| |||||| ||||||| ||||    
T  3601234 atgacagatgatgatgtaccttcatgtatttgacatattttagctaatggaatgcaatgaatttcttccttaa 3601162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 33 - 388
Target Start/End: Original strand, 2114168 - 2114523
Alignment:
Q  33 cttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggattttgctcttgattct 132  Q
    |||||||||||  | ||||| ||||| ||||| | ||| ||||||||||| || ||| |  |||||  |||| || ||||| || |||||||||||||||    
T  2114168 cttgtgtgacactgatgtgggggaggctgtcgagttacatacaactttggaattggtatcagatctcgagtttgataatgttgactttgctcttgattct 2114267  T
Q  133 aaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagacagttgttacttaatagtttaaaga 232  Q
    ||||  ||| |||||| ||| |||| | || ||||||||| ||   || || | ||||||||||||||||||| ||| || ||| ||||||| ||  |||    
T  2114268 aaaaaagttattgattttgtgaatttacatgtagatgataataacgagcttgggtgtatcatatatgcttgtaaacacttattagttaatagatttcaga 2114367  T
Q  233 actctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgt 332  Q
    |||||||||||||||| || |||| | || ||||||||||||||||||| |||||| || || ||| ||  ||||||||  ||| ||||||||||||| |    
T  2114368 actctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattagcttaggcagccctatccaatcctagcccccgtgttatagatgatct 2114467  T
Q  333 accctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    ||| |  |||||| | ||||||||| |||||||||| |||||| ||||||| ||||    
T  2114468 acctttatgtatttggcacattttaactaatgaaatgcaatgaatttcttccttaa 2114523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 388
Target Start/End: Original strand, 17321754 - 17322042
Alignment:
Q  100 cagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatg 199  Q
    ||||| |||||||| |||||||| |||||||  ||||  |||||||||| ||| |||||   ||||||||| |||||  ||||| | || || ||   ||    
T  17321754 cagtttgacaatgtcgattttgcacttgattgcaaaaaagttgttgattgtgtcaattctagtatagatgacagtagcgagtttggatgcattattagtg 17321853  T
Q  200 cttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccc 299  Q
    |||||| |||||||||| |  |||| ||  ||||||||||||||||||| || ||||||||| | ||| |||| |||||||||||||||||  || |||     
T  17321854 cttgtaaacagttgttattggatagatttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagctcaagcagccct 17321953  T
Q  300 atttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    || |||||||||  ||||| |||| |||||||||||||| |||||  |||||||||||||||||||| | |||||| ||||||| ||||    
T  17321954 atctaatcctagcccccatattattgatgatgtaccctcatgtatgtgacacattttagctaatgaattgcaatgaatttcttccttaa 17322042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 32544664 - 32544293
Alignment:
Q  1 tttgctcttgcaacaaaagactggtttgcttccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttc 100  Q
    |||| |||||| | || ||||||||||||| ||||||||||||||| ||||||||||||||| | | ||| ||||||||||| |||| | |  ||||||     
T  32544664 tttgttcttgccaaaacagactggtttgctcccttgtgtgacatagatgtggtggaggttgtggagttacatacaactttggaatggatttcagatcttt 32544565  T
Q  101 agttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgc 200  Q
    |||| || |||||||| |        ||||  |||||  ||||||||| ||| |||||| || ||||||||| | || || || |||||||||||| | |    
T  32544564 agtttgataatgtggact--------gatttcaaaagatttgttgattttgtgaattcatatgtagatgataatggtgagcttggttgtatcatatctac 32544473  T
Q  201 ttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccca 300  Q
    ||||| |||||| ||| ||||||| |   |||||| ||||||||||||||| || |||||| |||||| ||||| ||||||||||||||||| | ||| |    
T  32544472 ttgtaaacagttattagttaatagatatcagaactttcatgtcgagtttaacagaaggcaagcgaatgaggtcgttcacgagttagctcagatatcccta 32544373  T
Q  301 tttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    |  ||||||||   || | || ||   |||||||| |  |||||| | ||||||||| |||||||||| |||||| |||||||    
T  32544372 tccaatcctagcctccgttttgta---gatgtaccttaatgtatttggcacattttaactaatgaaatgcaatgaatttcttc 32544293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 388
Target Start/End: Complemental strand, 10395590 - 10395302
Alignment:
Q  100 cagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatg 199  Q
    ||||| || ||||| ||||||| |||||||| ||||||||||||||||| ||| ||||||  | |||||||||||||  ||||| | ||||| |    ||    
T  10395590 cagtttgataatgtagattttgttcttgattgtaaaagggttgttgattgtgtcaattcaagtttagatgatagtagcgagtttggatgtattagcactg 10395491  T
Q  200 cttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccc 299  Q
    |||||| |||| || || || |||  ||  |||||||| ||||  |||| |  ||||||||| | ||| |||| |||||||||||||||||  || ||      
T  10395490 cttgtaaacagctgctagttgataaattccagaactcttatgttaagttcagcaggaggcaagcaaatagggtagctcacgagttagctcaagcagccat 10395391  T
Q  300 atttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
     | | |||||||  |||||||||| |||||||||||  | |||||| | || ||||||| |||||||||||||||| ||||||| ||||    
T  10395390 gtctgatcctagcccccatgttattgatgatgtacctacatgtatttggcatattttagttaatgaaatacaatgattttcttccttaa 10395302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 39840060 - 39840200
Alignment:
Q  243 cgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgt 342  Q
    |||||| |||||| ||||||||||||||| |||| |||||| || | |||||  ||| ||||||||||| ||||||||| ||||| ||||| |||| | |    
T  39840060 cgagttcaataggtggcaaacgaatggggccgcttacgagtcagttaagacagacccgtttaatcctagctcccatgttctagataatgtatcctcatat 39840159  T
Q  343 attagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    ||| |||||||||||||| ||| |||| ||||| |||||||    
T  39840160 atttgacacattttagctgatggaataaaatgaatttcttc 39840200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 375
Target Start/End: Original strand, 27877589 - 27877855
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| |||||||| |||||||||||||||||   | || ||   | |||||||||||||  ||||| | ||||| ||   |||||||| ||    
T  27877589 aatgtagattttgttcttgattgtaaaagggttgttgattgcatcaactctagtttagatgatagtagcgagtttggatgtattatcactgcttgtaaac 27877688  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    || || || |  |||| ||  | ||||||||||| ||||| |  ||||||||| | ||| |||| |||||||||||||||||| ||||||  | ||||||    
T  27877689 agctgctagtagatagatttcataactctcatgttgagttcagcaggaggcaagcaaatagggtagctcacgagttagctcaggcaaccctgtctaatcc 27877788  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatga 375  Q
    |||   ||| ||||| |||||||||||  | |||||| |||| ||||||||||||||||| ||||||    
T  27877789 tagccgccacgttattgatgatgtacctacatgtatttgacatattttagctaatgaaatgcaatga 27877855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 12539125 - 12539283
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    ||||||||||||||||||| || ||||||||| | ||| || | ||||||||||||||| |  || ||   | |||||||||  ||||| |||| |||||    
T  12539125 agaactctcatgtcgagttcaacaggaggcaagcaaataggatagctcacgagttagctgatgcagccatgtctaatcctagcccccatattattgatga 12539224  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    ||||||  | | |||| |||| ||||||||||||||||| |||||| ||||||| ||||    
T  12539225 tgtacctacatttatttgacatattttagctaatgaaatgcaatgaatttcttccttaa 12539283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 44840002 - 44839901
Alignment:
Q  187 tgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttag 286  Q
    ||||||||  ||||||||||||| |||||    ||||||||  ||||||||||||||||||| ||||||||||||   |||||||||||||| |||||||    
T  44840002 tgtatcatgcatgcttgtagacaattgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttag 44839903  T
Q  287 ct 288  Q
    ||    
T  44839902 ct 44839901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 51080802 - 51080717
Alignment:
Q  202 tgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagc 287  Q
    |||||||||||||| |   |||||||  | |||||||||||||||||||||||||||||| | |||||||||||||| || |||||    
T  51080802 tgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagc 51080717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 11351699 - 11351641
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  11351699 agaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct 11351641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 2536584 - 2536536
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  2536584 agaactctcatgtcgagttcaataggaggcaagccaatggggtcgctca 2536536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 33315170 - 33315229
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcag 291  Q
    |||| |||||||||||||||||||||| ||   |||||||||| ||||||||||||||||    
T  33315170 aactttcatgtcgagtttaataggaggtaagtaaatggggtcgttcacgagttagctcag 33315229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 6784287 - 6784333
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgct 276  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||    
T  6784287 agaactctcatgtcgagttcaataggaggcaagccaatggggtcgct 6784333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 291
Target Start/End: Complemental strand, 39648580 - 39648398
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    |||||||||||||||||| |||||||||  || || ||| || | || | |||||||| ||||  |||| | ||| | ||||| |||| | |||||||||    
T  39648580 aatgtggattttgctcttaattctaaaatagtcgtagatcattttaagttagatatagttgatcatagtaaatttggatgtattatatctacttgtagac 39648481  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcag 291  Q
    | |||||  |  ||||| |  ||||||||| ||||||||||||||| || ||| | |||  ||||||||| || |||||||||    
T  39648480 aattgtttatcgatagtcttcagaactctcgtgtcgagtttaatagaagtcaagctaattaggtcgctcatgaattagctcag 39648398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 25396262 - 25396209
Alignment:
Q  327 tgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttc 380  Q
    ||||||||| || ||||||||||||||| |||||||||||| ||||||| ||||    
T  25396262 tgatgtaccatcatgtattagacacattgtagctaatgaaaaacaatgaatttc 25396209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 5811388 - 5811432
Alignment:
Q  234 ctctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||    
T  5811388 ctctcatgtcgagtttaataggagacaaacaaatggggtagctca 5811432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 21515218 - 21515270
Alignment:
Q  236 ctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  21515218 ctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct 21515270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 33315231 - 33315307
Alignment:
Q  306 tcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttctt 382  Q
    |||||| |||||| ||||||||||||  || || |||||| ||||||||||| ||||| || |||||||| ||||||    
T  33315231 tcctagctcccatattatagatgatgctccttcatgtatttgacacattttaactaataaagtacaatgaatttctt 33315307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 39839894 - 39839982
Alignment:
Q  48 tgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggattttgctcttgattctaaaa 136  Q
    ||||| |||||| |||| | ||| ||||||||||| ||| || |  |||||||| ||||||||  ||||||||| ||||||||||||||    
T  39839894 tgtgggggaggtcgtcgagctacatacaactttggaatgagtttcagatcttcaattcgacaacatggattttgttcttgattctaaaa 39839982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 22161760 - 22161806
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    ||||||||||||||||||| |||||||||| |||||| ||| |||||    
T  22161760 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 22161806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 11644758 - 11644794
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  11644758 aactctcatgtcgagtttattaggaggcaaacaaatg 11644794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 21182647 - 21182683
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  21182647 aactctcatgtcgagtttattaggaggcaaacaaatg 21182683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 26418845 - 26418789
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||| | |||| ||| ||||| || ||||||    
T  26418845 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagct 26418789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 32108435 - 32108491
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||| | |||| ||| ||||| || ||||||    
T  32108435 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagct 32108491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 386
Target Start/End: Original strand, 6969472 - 6969777
Alignment:
Q  84 atgggtgttggatcttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagttt 183  Q
    |||||| | ||| ||||| |||||||| || || |||||||| ||||||||||  ||||||||| |||| ||||| ||||||||||||| |||| |||||    
T  6969472 atgggtctcggaccttcaattcgacaacgtagactttgctctggattctaaaaaagttgttgatcatgttaattctgatatagatgataatagtgagttt 6969571  T
Q  184 agttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagt 283  Q
     ||||||| || | |||||||||||| |||||||  ||||| ||  |||||||||||||||| || |||| |||| ||   |||||||||||||||||||    
T  6969572 ggttgtataatttctgcttgtagacaattgttacaaaatagatttcagaactctcatgtcgatttcaataagaggtaagtaaatggggtcgctcacgagt 6969671  T
Q  284 tagctcagacaaccccatttaatcctagatcccatgtt---atagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttc 380  Q
    ||||||||||| |||   | | ||||||||||||| ||   ||||||||||  || || |||||| ||||||||||||||| |||||| |||||  ||||    
T  6969672 tagctcagacagccctgctaactcctagatcccatatttcaatagatgatgctccttcatgtatttgacacattttagctattgaaatgcaatgtatttc 6969771  T
Q  381 ttcttt 386  Q
    ||||||    
T  6969772 ttcttt 6969777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 370
Target Start/End: Complemental strand, 17283829 - 17283484
Alignment:
Q  24 gtttgcttccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggattttgct 123  Q
    ||||||| |||||||||||| |  | | | ||||| ||||||| ||| ||||||||||| |||||| |    ||  ||||| || |||||||| ||||||    
T  17283829 gtttgctcccttgtgtgacacaaatataggggaggctgtcgggttacatacaactttggaatgggtatcaactcaacagtttgataatgtggactttgct 17283730  T
Q  124 cttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagacagttgttacttaata 223  Q
    |||||||||||||| |||||||||  ||| |||||| || ||||| ||| ||   ||||| |||||||||||| |||||||| |||  | ||| | ||||    
T  17283729 cttgattctaaaagagttgttgatcttgtgaattcacatgtagataataataacgagtttggttgtatcatatttgcttgtaaacaactattagtcaata 17283630  T
Q  224 gtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttat 323  Q
    | ||  |||||||| |||||||||| |||||||||||||||||||||||  ||||||||||| |||| ||||| | ||  |||| |||  ||||||||||    
T  17283629 gatttcagaactcttatgtcgagttcaataggaggcaaacgaatggggtgactcacgagttaactcaaacaactctatccaatcatag-ccccatgttat 17283531  T
Q  324 agatgatgtaccctcgtgtattagacacattttagctaatgaaatac 370  Q
    |||||||||||| || |||||| | ||||||||||||| ||||||||    
T  17283530 agatgatgtaccttcatgtatttgtcacattttagctattgaaatac 17283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 37836721 - 37836384
Alignment:
Q  21 ctggtttgcttccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggatttt 120  Q
    |||||||||| | | |||||| |||| || || ||||| |||| || ||| ||||||||||| ||| |||| ||||||  ||||| |||||||||||||     
T  37836721 ctggtttgctccttcgtgtgatatagatgcgggggaggctgtcaggttacatacaactttggaatgagtgtcggatctcgagttctacaatgtggatttc 37836622  T
Q  121 gctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagacagttgttactta 220  Q
    ||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||  ||||| ||||| |||||| | ||  || ||| |||||| |||    
T  37836621 gctcttgattctaaaagagttgttgattgtataaattcacatatagatgatagtagcgagtttggttgtgtcatatcttctcataaacaattgttagtta 37836522  T
Q  221 atagtttaaagaactctcatgtcgagtttaataggaggcaaa--cgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccat 318  Q
    |||||||    |||| ||||||| |||| || | ||| ||||   ||||| ||||||  ||||||||| | ||| || || || | ||| ||| || |||    
T  37836521 atagttttcgaaactgtcatgtcaagttcaacaagagacaaaagtgaatgaggtcgcctacgagttagttgagaaaatccaatct-atcatagctcacat 37836423  T
Q  319 gttatagatgatgtaccctcgtgtattagacacatttta 357  Q
    ||||| |||||||||| ||| |||||| |||||||||||    
T  37836422 gttattgatgatgtacactcatgtatttgacacatttta 37836384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 97 - 383
Target Start/End: Complemental strand, 1479466 - 1479180
Alignment:
Q  97 cttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatat 196  Q
    ||||| |||||||| ||||| || ||||| ||||||||||| ||||||||| |||| |||||  ||  |||||||| |||| | ||| ||||||| || |    
T  1479466 cttcaattcgacaacgtggacttcgctctagattctaaaagagttgttgatcatgttaattcttatgaagatgataatagtgactttggttgtataattt 1479367  T
Q  197 atgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaac 296  Q
     ||||| ||||   |||||||  ||||| ||  ||||||||||| ||||||| ||||||||||||   ||||||||| ||||| ||||||||| |||| |    
T  1479366 ctgcttatagatgattgttacaaaatagatttcagaactctcatatcgagttcaataggaggcaagtaaatggggtcactcacaagttagctcggacagc 1479267  T
Q  297 cccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    |||||| |||||||| || ||| ||||||||||||  || || | |||| | ||||||||| | |||||||| |||||| |||||||    
T  1479266 cccattaaatcctagctcacatattatagatgatgctccttcatatatttggcacattttaaccaatgaaatgcaatgaatttcttc 1479180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 382
Target Start/End: Original strand, 46078347 - 46078619
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    |||||||| |||| ||||||||||||||| |||||||||| ||| ||||||  | |||||||||  |   ||||| ||||||| |||| |||||||| |     
T  46078347 aatgtggactttgatcttgattctaaaagagttgttgattttgtgaattcacgtgtagatgataacaacgagtttggttgtattatatctgcttgtaaat 46078446  T
Q  209 agttgttacttaatag-tttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatc 307  Q
    |||| | | ||||||| |||  ||||||||||||||||| | || | ||||||||| ||| || |||||||||||||| || ||||| ||| |  |||||    
T  46078447 agttatcagttaatagattttcagaactctcatgtcgagctcaacaagaggcaaacaaatagg-tcgctcacgagttaacttagaca-ccctacctaatc 46078544  T
Q  308 ctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttctt 382  Q
    ||||  ||||||||||||| ||  |||| || |||||| |||||||||||||||||||||| |||||| ||||||    
T  46078545 ctagcccccatgttatagacgacttaccttcatgtatttgacacattttagctaatgaaatgcaatgaatttctt 46078619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 35096917 - 35097067
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    ||||||||||||||||||| ||||| |||||| | ||| |||| ||||||||||||||||||||||||| || |||||||||    | | ||||||||||    
T  35096917 agaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagctcagacaaccctatctaatcctagccatcgtattatagatga 35097016  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttc 380  Q
    |||||| || |||||| | |||||||||||||||||||| |||||| ||||    
T  35097017 tgtaccttcatgtatttggcacattttagctaatgaaatgcaatgaatttc 35097067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 109 - 383
Target Start/End: Original strand, 16889030 - 16889303
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| |||||||| ||||| ||||||||||| ||| |||||  || |||| ||||||||  ||||| | ||||| ||   || ||||| ||    
T  16889030 aatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctaatctagaagatagtagcgagtttggatgtattatcactgtttgtaaac 16889129  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    ||  | || || |||| ||  ||||||||||||| ||||| | | |||||||| | ||| |||| |||||||||||||||||| || ||| || ||||||    
T  16889130 agccgctagttgatagatttcagaactctcatgttgagttcagtcggaggcaagcaaatagggtagctcacgagttagctcag-cagccctatctaatcc 16889228  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    ||| |||||||| || |||||||||||  | |||||| | || |||||| |||| ||||| |||||| |||||||    
T  16889229 tagctcccatgtgattgatgatgtacctacatgtatttggcatattttatctaacgaaatgcaatgattttcttc 16889303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 9631936 - 9631750
Alignment:
Q  19 gactggtttgcttccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggatt 118  Q
    |||||||||| | ||||||||||||||| ||| | ||||| ||||||| ||| ||||||||||  |||||| |  ||||| || || || |||||||| |    
T  9631936 gactggtttgttcccttgtgtgacatagatgttggggaggatgtcgggttacatacaactttgaaatgggtatcagatctccaatttgataatgtggact 9631837  T
Q  119 ttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgta 205  Q
    |||||||||||||  |||| |||||||||| ||| |||||  || ||||||||  ||   ||||| ||||| |||||| ||||||||    
T  9631836 ttgctcttgattcccaaagagttgttgattttgtgaattcccatgtagatgatcataacgagtttggttgtgtcatatctgcttgta 9631750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 345
Target Start/End: Original strand, 9633045 - 9633182
Alignment:
Q  208 cagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatc 307  Q
    ||||| ||| ||||||| ||  ||||||||||||||||||| ||||||||||||  ||||||||||| | |||||||||||||||||| || ||  |||     
T  9633045 cagttattagttaatagatttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcgattacgagttagctcagacaatcctatccaata 9633144  T
Q  308 ctagatcccatgttatagatgatgtaccctcgtgtatt 345  Q
    ||||  ||||| |||||||||  ||||| || ||||||    
T  9633145 ctagcccccatattatagatggcgtaccttcatgtatt 9633182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 19316058 - 19315935
Alignment:
Q  164 tagatgatagtagttagtttagttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaac 263  Q
    |||||||||||||| || |  |||| || ||| ||||||||||| |||||||  |||| |||||  ||||||||||||||||||| |||||||||||| |    
T  19316058 tagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcatgtcgagttcaataggaggcaagc 19315959  T
Q  264 gaatggggtcgctcacgagttagc 287  Q
     ||||| |||| ||| || |||||    
T  19315958 caatggagtcgttcatgaattagc 19315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 333
Target Start/End: Complemental strand, 23059564 - 23059340
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| |||||||| ||||| ||||||||||| ||| |||||   | |||| ||||||||  ||||| | ||||| ||   | |||||| ||    
T  23059564 aatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgtattatcactacttgtaaac 23059465  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    || || || || |||| ||  ||||||||||||| ||||| |   |||||||| | ||| |||| |||||||||||||||||| ||  || || ||||||    
T  23059464 agctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagtcctatctaatcc 23059365  T
Q  309 tagatcccatgttatagatgatgta 333  Q
    |||  ||||||| || |||||||||    
T  23059364 tagcccccatgtgattgatgatgta 23059340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 388
Target Start/End: Complemental strand, 49407175 - 49407019
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatg 331  Q
    |||||| ||||| |||| ||||||| ||||   ||| |||||||||||||||||| | || ||||| | |  |||||||| || ||  ||||||||||||    
T  49407175 aactcttatgtcaagttcaataggaagcaagtaaatagggtcgctcacgagttagtttaggcaaccacgtcaaatcctagctctcacattatagatgatg 49407076  T
Q  332 taccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    | |  || | |||| ||||||||||| |||||||||| ||| || ||||||| ||||    
T  49407075 ttctttcatatatttgacacattttaactaatgaaatgcaacgaatttcttccttaa 49407019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 1311155 - 1311218
Alignment:
Q  234 ctctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacc 297  Q
    ||||||||| ||||||||||||||| ||   |||| ||||||||||||||||| ||||||||||    
T  1311155 ctctcatgttgagtttaataggaggtaagtcaatgaggtcgctcacgagttagttcagacaacc 1311218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 1394124 - 1394191
Alignment:
Q  220 aatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagc 287  Q
    ||||||||  ||||||||||||||||||| |||||||||||| | |||||||||| ||| || |||||    
T  1394124 aatagttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagc 1394191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 13200849 - 13200914
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacc 297  Q
    ||||||||||||||||| | |||||||||| | |||| ||| ||||| ||||||||| || |||||    
T  13200849 aactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttagctaaggcaacc 13200914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 37857072 - 37857011
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcag 291  Q
    ||||||||||||| ||||| || ||||||||| | ||| | || ||||||||||||||||||    
T  37857072 agaactctcatgttgagttcaacaggaggcaagcaaatagagtagctcacgagttagctcag 37857011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 5124572 - 5124524
Alignment:
Q  340 tgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    |||||| ||||||||||| ||||||||||||||||| || |||| ||||    
T  5124572 tgtatttgacacattttaactaatgaaatacaatgatttgcttccttaa 5124524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 15065914 - 15065950
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  15065914 aactctcatgtcgagtttattaggaggcaagcgaatg 15065950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 17459409 - 17459445
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  17459409 aactctcatgtcgagtttattaggaggcaagcgaatg 17459445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 43989360 - 43989312
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    ||||| ||||||||||||| |||||||||||| | |||| |||||||||    
T  43989360 agaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctca 43989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 47783000 - 47783056
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||| | |||| ||| ||||| || ||||||    
T  47783000 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagct 47783056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 98 - 368
Target Start/End: Complemental strand, 12555593 - 12555323
Alignment:
Q  98 ttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatata 197  Q
    |||| ||| |||| || |||||||  |||||||| |||||| | |||||| | || ||||||||||||||||||| |||  ||||| ||||||| ||||     
T  12555593 ttcaattcaacaacgtagattttgtccttgattcaaaaaggttcgttgatcaagttaattcagatatagatgataatagcgagtttggttgtattatatt 12555494  T
Q  198 tgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacc 297  Q
    || ||||||||||||||||| ||| |||||  |||||||||||||| |||| ||||||||||||   |||||||||||| |||||||| ||||  |||||    
T  12555493 tgattgtagacagttgttacataacagttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgcttacgagttaactcaagcaacc 12555394  T
Q  298 ccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaat 368  Q
    |||||||| || || || | |||| |||||||| ||||||| |||||| | |||||||| |||||||||||    
T  12555393 ccatttaacccaagctctcgtgttttagatgatataccctcatgtatttggcacattttggctaatgaaat 12555323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 388
Target Start/End: Original strand, 6860378 - 6860670
Alignment:
Q  97 cttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatat 196  Q
    ||||| ||||||||  |||| |||||| | ||||||||||| ||||||||| |||| ||||| |||  |||||||| |||| ||||| ||||||| || |    
T  6860378 cttcaattcgacaacatggactttgctatggattctaaaagagttgttgatcatgttaattctgatgaagatgataatagtgagtttggttgtataattt 6860477  T
Q  197 atgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaac 296  Q
     || |  |||||  |||||||  ||||| ||  | ||||||||||||||||| || ||||||||||  |||| | || |||||||||||| || |||| |    
T  6860478 ctgatactagacgattgttacaaaatagatttcaaaactctcatgtcgagttcaacaggaggcaaataaatgcgatcactcacgagttagttctgacagc 6860577  T
Q  297 cccatttaatcctagatcccatgttatagatgatgtaccctcgtgt-attagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
     | ||| |||||||| ||| || |||||||| |||  || || ||| ||| || ||||||||||||||||||| |||||| ||| ||||||||    
T  6860578 actattaaatcctagctcctatattatagataatgctccttcatgtaatttgatacattttagctaatgaaatgcaatgaattttttctttaa 6860670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 368
Target Start/End: Complemental strand, 28590175 - 28589916
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| |||||||| |||||  |||||||||| ||| |||||   | |||| ||||||||  ||||| | ||||| ||   |||||||| ||    
T  28590175 aatgtagattttgttcttgattgtaaaaaagttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgtattatcactgcttgtaaac 28590076  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    || || || || |||| ||  ||||||||||||| ||||| |   |||||||| | ||| |||| |||||||||||||||||| || ||| || ||||||    
T  28590075 agctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatctaatcc 28589976  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaat 368  Q
    |||  ||||||| || |||||| ||||    |||||| | || |||||| ||||||||||    
T  28589975 tagcccccatgtgattgatgatatacctaaatgtatttggcatattttatctaatgaaat 28589916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 375
Target Start/End: Complemental strand, 41316088 - 41315822
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| |||||||| ||||| ||||||||||| ||| |||||   | |||| ||||||||  ||||| | ||||| ||   | |||||| ||    
T  41316088 aatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgtattatcactacttgtaaac 41315989  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    || || || || |||| ||  ||||||||||||| ||||| |   |||||||| | ||| |||| |||||||||||| ||||| |||||| || |||| |    
T  41315988 agctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcaaccctatctaatac 41315889  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatga 375  Q
    |||  ||||||| || |||||| ||||  | | |||| | || |||||| |||||||||| ||||||    
T  41315888 tagcccccatgtgattgatgatatacctacatatatttggcatattttatctaatgaaatgcaatga 41315822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 29894423 - 29894365
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  29894423 agaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct 29894365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 24543222 - 24543280
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| ||||||| |||| | |||||||||||||| || ||||||    
T  24543222 agaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagct 24543280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 37140588 - 37140684
Alignment:
Q  270 ggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaa 366  Q
    ||||| |||||| ||| |||||||||| ||||  ||||| || |||||||||||||| |||| | |||| | |||| |  |||||||||||||||||    
T  37140588 ggtcgttcacgaattaactcagacaactccatcaaatcccagctcccatgttatagaggatgcatcctcatatatttggtacattttagctaatgaa 37140684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 373
Target Start/End: Original strand, 10977766 - 10977909
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    ||||||||||||| ||||| || | |||||||   ||| |||| || || ||| ||||||||  | |||  | |||||||||  ||||| |||| |||||    
T  10977766 agaactctcatgttgagttcaacatgaggcaagtaaatagggtagcccatgagctagctcaggtagccctgtctaatcctagcccccatattattgatga 10977865  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaat 373  Q
    | ||||  | |||||| |||| ||||||||||||||||||||||    
T  10977866 tatacctacatgtatttgacatattttagctaatgaaatacaat 10977909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 36365049 - 36365107
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||| ||||||||||| |||||||||||| | |||| ||||||||| || ||||||    
T  36365049 agaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagct 36365107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 40287147 - 40287062
Alignment:
Q  202 tgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagc 287  Q
    |||||||||||||| |   |||||||  | |||||||||||| ||||||||| ||||||| | ||||||||| |||| || |||||    
T  40287147 tgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactcatgaattagc 40287062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 361
Target Start/End: Original strand, 20916261 - 20916543
Alignment:
Q  72 tacaactttggtatgggtgttggatcttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgat 171  Q
    |||||| ||||  |||||||  ||||||||||| ||||||||||||||  ||||||| ||||||||| |||||||||||||| ||||| |||||||| ||    
T  20916261 tacaacattggagtgggtgtcagatcttcagtttgacaatgtggatttcactcttgactctaaaagg-ttgttgattatgtagattcacatatagattat 20916359  T
Q  172 agtagttagtttagttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatgggg 271  Q
    | |||| ||||| | |||||||||| |||||||| |  ||| |||  || ||||||  |||||||| |||| ||||| |||||||||||| |||||| ||    
T  20916360 aatagtgagtttggatgtatcatatctgcttgtaaattgttattagatagtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgagg 20916459  T
Q  272 tcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagcta 361  Q
    |||||| ||||||||||||  || |||||||||||      || ||| |||||||||||||| |||| |||||| |||| ||||||||||    
T  20916460 tcgctcccgagttagctcatgcagccccatttaat------tctcattttatagatgatgtatcctcatgtatttgacatattttagcta 20916543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 361
Target Start/End: Original strand, 20925223 - 20925505
Alignment:
Q  72 tacaactttggtatgggtgttggatcttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgat 171  Q
    |||||| ||||  |||||||  ||||||||||| ||||||||||||||  ||||||| ||||||||| |||||||||||||| ||||| |||||||| ||    
T  20925223 tacaacattggagtgggtgtcagatcttcagtttgacaatgtggatttcactcttgactctaaaagg-ttgttgattatgtagattcacatatagattat 20925321  T
Q  172 agtagttagtttagttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatgggg 271  Q
    | |||| ||||| | |||||||||| |||||||| |  ||| |||  || ||||||  |||||||| |||| ||||| |||||||||||| |||||| ||    
T  20925322 aatagtgagtttggatgtatcatatctgcttgtaaattgttattagatagtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgagg 20925421  T
Q  272 tcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagcta 361  Q
    |||||| ||||||||||||  || |||||||||||      || ||| |||||||||||||| |||| |||||| |||| ||||||||||    
T  20925422 tcgctcccgagttagctcatgcagccccatttaat------tctcattttatagatgatgtatcctcatgtatttgacatattttagcta 20925505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 109 - 388
Target Start/End: Complemental strand, 10346706 - 10346428
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    |||||| | ||||| ||||| | |||||| |||||||||| ||| |||| | ||||||||||||||||  | ||| | ||||| ||   | ||||||  |    
T  10346706 aatgtgaactttgcacttgactgtaaaagagttgttgattgtgtcaattaaaatatagatgatagtagcgaatttggatgtattattactacttgtaacc 10346607  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    |  ||||| |  |||| ||  ||||||| ||||| ||||| || ||||||||| ||||| ||||||||||||||||||||||| |||||| || |||| |    
T  10346606 aaatgttagtggatagatttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagctcaggcaaccctatataattc 10346507  T
Q  309 tagatcc-catgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    ||  ||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||| ||||    
T  10346506 ta--tcctcatattatagatgatgtaccctcatgtatttgacacattttagctaatgaaatgcaatgaatttcttccttaa 10346428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 230 - 383
Target Start/End: Complemental strand, 1017728 - 1017575
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    ||||||||||||| ||||| ||  |||||||| | ||| |||| ||||||||||||||||||||| ||| || |||||||||  ||||||| || |||||    
T  1017728 agaactctcatgttgagttcaaccggaggcaagcaaatagggtagctcacgagttagctcagacagccctatctaatcctagcccccatgtgattgatga 1017629  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    ||||||  | |||||| | || |||||| |||||||||| |||| | |||||||    
T  1017628 tgtacctacatgtatttggcatattttatctaatgaaatgcaataattttcttc 1017575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 383
Target Start/End: Complemental strand, 26731103 - 26730820
Alignment:
Q  100 cagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatg 199  Q
    ||||| || ||||| ||||||| |||||||| ||||| ||||||||||| ||| |||||   | |||| ||||||||  ||||| | ||||| ||   |     
T  26731103 cagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgtattatcacta 26731004  T
Q  200 cttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccc 299  Q
    |||||| |||| |  || || |||| ||  ||||||||||||| ||||| |   |||||||| | ||| |||| || ||||||||||||||| || |||     
T  26731003 cttgtaaacagctactagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagcacacgagttagctcaggcagccct 26730904  T
Q  300 atttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    || |||||||||  ||||||| || |||||| ||||  | |||||| | || |||||| |||||||||| |||||| |||||||    
T  26730903 atctaatcctagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaaatgcaatgattttcttc 26730820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 38998888 - 38998973
Alignment:
Q  202 tgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagc 287  Q
    |||||||||||||| |   |||||||  | |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||    
T  38998888 tgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagc 38998973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 368
Target Start/End: Complemental strand, 47703958 - 47703699
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| |||||||| ||||| ||||||||||| ||| |||||   | |||| ||||||||  ||||| | ||||| ||    ||||||| ||    
T  47703958 aatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgtattatcaccgcttgtaaac 47703859  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    || || || || |||| ||  ||||||||||||| |||||     |||||||| | ||| |||| |||||||||||||||||| || ||| || ||||||    
T  47703858 agctgctagttgatagatttcagaactctcatgttgagttatgccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatataatcc 47703759  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaat 368  Q
    |||  ||||||| || |||||| ||||  | |||||| | || |||||| ||||||||||    
T  47703758 tagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaaat 47703699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 6821689 - 6821844
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatg 331  Q
    |||||| |||||||||||||||| ||  ||  ||||| ||||| |||||||||||||| ||||  | ||||||||| ||| ||   |||||||||| |||    
T  6821689 aactcttatgtcgagtttaatagaagataagtgaatgaggtcgttcacgagttagctccgacagtctcatttaatcttagctcttttgttatagattatg 6821788  T
Q  332 taccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttcttta 387  Q
    || | || ||||||  | | |||||||||||||||||  ||| | |||||||||||    
T  6821789 tatcttcatgtattttatatattttagctaatgaaatgtaataaatttcttcttta 6821844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 36684869 - 36684972
Alignment:
Q  185 gttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagtt 284  Q
    ||||||||||  | |||||||||||||||||   |  || |||  ||||||||||||||||||| |||||||||||| | |||||||||||||| || ||    
T  36684869 gttgtatcattcaggcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaatt 36684968  T
Q  285 agct 288  Q
    ||||    
T  36684969 agct 36684972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 51976769 - 51976827
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    |||||||||||| |||||| |||||||||||| | |||||||||||||| || ||||||    
T  51976769 agaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagct 51976827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 37796586 - 37796663
Alignment:
Q  202 tgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcac 279  Q
    |||||||||||||| |   |||||||  | ||| |||||||||||||||||||||||||| | |||| ||||||||||    
T  37796586 tgtagacagttgtttcaggatagttttcaaaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcac 37796663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 2651865 - 2651829
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2651865 aactctcatgtcgagtttattaggaggcaaacgaatg 2651829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 27265809 - 27265864
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagc 287  Q
    ||||||||||| |||||||||| ||| ||||| |||| |||||||||||| |||||    
T  27265809 aactctcatgttgagtttaataagagacaaactaatgaggtcgctcacgaattagc 27265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 8705721 - 8705767
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgct 276  Q
    ||||||||||||||||||| |||||||||||| | |||| |||||||    
T  8705721 agaactctcatgtcgagttcaataggaggcaagctaatgaggtcgct 8705767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 9057608 - 9057654
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgct 276  Q
    ||||||||||||||||||| |||||||||||| | |||| |||||||    
T  9057608 agaactctcatgtcgagttcaataggaggcaagctaatgaggtcgct 9057654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 15790052 - 15790088
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  15790052 aactctcatgtcgagtttactaggaggcaagcgaatg 15790088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 32073664 - 32073608
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||| | |||| ||| ||||| || ||||||    
T  32073664 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagct 32073608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 45736475 - 45736515
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggg 270  Q
    ||||||||||||||||||| ||||||||||| || ||||||    
T  45736475 agaactctcatgtcgagttcaataggaggcagaccaatggg 45736515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 72 - 320
Target Start/End: Complemental strand, 11911625 - 11911376
Alignment:
Q  72 tacaactttggtatgggtgttggatcttcagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgat 171  Q
    ||||||||||| ||||||||  ||| |||| || ||| ||||||| |||||||||||||||||||| | | ||||| | |||||||||  ||| ||||||    
T  11911625 tacaactttggaatgggtgtcagatattcaatttgactatgtggagtttgctcttgattctaaaagagattttgatcaagtaaattcaactatcgatgat 11911526  T
Q  172 agtagttagtttag-ttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggg 270  Q
    | |||  ||||| | ||||||||||| ||  |||||||| | |||| ||||||||||  | ||||||||||||||||| ||||||||| |||||||||||    
T  11911525 aatagcgagttttggttgtatcatatttgtatgtagacaatagttaattaatagttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggg 11911426  T
Q  271 gtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgt 320  Q
    ||| | ||||||||||||| |  | |||||||||||||||| || |||||    
T  11911425 gtcccccacgagttagctcgggaagccccatttaatcctagctctcatgt 11911376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 9809029 - 9808665
Alignment:
Q  19 gactggtttgcttccttgtgtgacataggtgtggtggaggttgtcgggatacgtacaactttggtatgggtgttggatcttcagttcgacaatgtggatt 118  Q
    |||||||||||| |||| ||||||| |  ||||| ||||||||||| | ||| ||||  ||||| |||||| |   |||| | |||  | |||||||| |    
T  9809029 gactggtttgctcccttctgtgacacatatgtgggggaggttgtcgagttacatacagttttggaatgggtatcaaatctccggtttaataatgtggact 9808930  T
Q  119 ttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagacagttgttact 218  Q
    ||||||||||||  ||||| |||||||||| ||| |||||| || ||||||||  |||  || || ||||||| |||| |||||||| |||  | ||| |    
T  9808929 ttgctcttgatttcaaaagagttgttgattttgtgaattcacatgtagatgatgatagcgagcttggttgtattatatctgcttgtaaacatatattagt 9808830  T
Q  219 taatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccat 318  Q
    |||||| ||  | |||||||||| |||||| ||    ||||||| |||||| |||||||||||||||||||||||| | | ||  |||||||   |||||    
T  9808829 taatagatttcaaaactctcatgccgagttcaacttaaggcaaatgaatggagtcgctcacgagttagctcagacagctctatccaatcctaacccccat 9808730  T
Q  319 gttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
     ||||||||||||| || || |||||| | |||| ||||||||||||||| |||| | |||||||    
T  9808729 attatagatgatgttccttcatgtatttgtcacactttagctaatgaaatgcaataaatttcttc 9808665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 26440772 - 26440873
Alignment:
Q  187 tgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttag 286  Q
    ||||||||  |||||||||||||||||||    ||||||||  ||||||||||||||||||| |||||||||||| | |||||||| ||||| |||||||    
T  26440772 tgtatcatgcatgcttgtagacagttgtttgacaatagtttttagaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttag 26440871  T
Q  287 ct 288  Q
    ||    
T  26440872 ct 26440873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 375
Target Start/End: Complemental strand, 26951663 - 26951397
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| |||||||| ||||| ||||||||||| ||| ||||    | |||| ||||||||  ||||| | ||||| ||   |||||||| ||    
T  26951663 aatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattatagtctagaagatagtagcaagtttggatgtattatcactgcttgtaaac 26951564  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    |  || || || |||| ||  ||||||||||||| ||||| |   |||||||| | ||| |||| |||||||||||||||||| || ||| || ||||||    
T  26951563 aactgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatctaatcc 26951464  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatga 375  Q
    |||  ||||||| || |||||| ||||  | |||||| | || |||||| |||||||||| ||||||    
T  26951463 tagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaaatgcaatga 26951397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 21276611 - 21276544
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtag 176  Q
    ||||| ||||||| |||||||| ||||||||||||||||| ||| |||||   | |||||||||||||    
T  21276611 aatgtagattttgttcttgattgtaaaagggttgttgattgtgtcaattctagtttagatgatagtag 21276544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 7251082 - 7251155
Alignment:
Q  197 atgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggg 270  Q
    ||||||||| ||| ||||| |  | ||||||  |||||||| |||||||||| |||||||||||||| ||||||    
T  7251082 atgcttgtaaacaattgtttcagattagttttcagaactcttatgtcgagttcaataggaggcaaaccaatggg 7251155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 388
Target Start/End: Complemental strand, 21448 - 21295
Alignment:
Q  235 tctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtac 334  Q
    |||||||||||||| || |||||||||   ||| |||| |||||  ||||||||||   | ||| || |||||||||  |||||  ||| ||||||||||    
T  21448 tctcatgtcgagttcaacaggaggcaaggaaatagggtagctcataagttagctcaagtagccctatctaatcctagcccccatactattgatgatgtac 21349  T
Q  335 cctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    || | |||||| |||||||||||||||||||||| |||||| ||||||| ||||    
T  21348 ccacatgtatttgacacattttagctaatgaaatgcaatgaatttcttcattaa 21295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 383
Target Start/End: Original strand, 24870310 - 24870592
Alignment:
Q  101 agttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgc 200  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||| ||| |||||   | |||||||||||||  |||||   ||||| ||   |||    
T  24870310 agtttgacaatgtcgattttgctcttgattgtaaaagggttgttgattgtgtcaattctagtttagatgatagtagcgagtttgaatgtattatcactgc 24870409  T
Q  201 ttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccca 300  Q
    ||||| |||| || || |  |||| ||  |||||||||| || ||||| || || |||||||| ||| || | || ||||||||||||||  || |||      
T  24870410 ttgtaaacagctgctagtagatagatttcagaactctcaagttgagttcaacagaaggcaaacaaataggatagcacacgagttagctcaagcagccctg 24870509  T
Q  301 tttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    | ||| ||||    |||| |||| |||||||||||  | | |||| || | ||||||||||||||||| |||||| |||||||    
T  24870510 tctaaccctaacctccatattattgatgatgtacctacatatatttgatatattttagctaatgaaatgcaatgattttcttc 24870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 375
Target Start/End: Original strand, 30304709 - 30304975
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| |||||||  || |||| ||||| ||||||||||| ||| |||||   | |||| ||||||||  ||||| | ||||| ||   |||||||| ||    
T  30304709 aatgtagattttgtgctggattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgtattatcactgcttgtaaac 30304808  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    || || || || |||||||  ||||||||||||| ||||| |   |||||||| | ||| |||| |||||||||||||||||| || ||| || ||||||    
T  30304809 agctgctagttgatagttttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatctaatcc 30304908  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatga 375  Q
    |||  ||||||| || |||||| ||||  | |||||| | || |||||| |||||||| | ||||||    
T  30304909 tagcccccatgtgattgatgatatacctacatgtatttggcatattttatctaatgaagtgcaatga 30304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 383
Target Start/End: Original strand, 24275121 - 24275404
Alignment:
Q  100 cagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatg 199  Q
    ||||| || ||||| ||||||| |||||||| ||||| ||||||||||| ||| |||||   | |||| ||||||||  ||||| | ||| | ||   ||    
T  24275121 cagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgttttatcactg 24275220  T
Q  200 cttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccc 299  Q
    |||||| |||  || || || |||  ||  ||||| ||||||| ||||| | | | |||||| | |||  ||| |||||||||||||||||| || |||     
T  24275221 cttgtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacgagttagctcaggcatccct 24275320  T
Q  300 atttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    || |||||||||  ||||||| || ||||||||||   | |||||| | || |||||| ||||||||||||||||| |||||||    
T  24275321 atctaatcctagcccccatgtgattgatgatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttc 24275404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 383
Target Start/End: Complemental strand, 24387092 - 24386809
Alignment:
Q  100 cagttcgacaatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatg 199  Q
    ||||| || ||||| ||||||| |||||||| ||||| ||||||||||| ||| |||||   | |||| ||||||||  ||||| | ||| | ||   ||    
T  24387092 cagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagtttggatgttttatcactg 24386993  T
Q  200 cttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaacccc 299  Q
    |||||| |||  || || || |||  ||  ||||| ||||||| ||||| | | | |||||| | |||  ||| |||||||||||||||||| || |||     
T  24386992 cttgtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacgagttagctcaggcatccct 24386893  T
Q  300 atttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    || |||||||||  ||||||| || ||||||||||   | |||||| | || |||||| ||||||||||||||||| |||||||    
T  24386892 atctaatcctagcccccatgtgattgatgatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttc 24386809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 34905551 - 34905641
Alignment:
Q  197 atgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagc 287  Q
    |||||||||||||||||||  ||||||||||  ||||||||  ||| ||||| |||||||| ||||| |||| ||||||||| || |||||    
T  34905551 atgcttgtagacagttgtttgttaatagttttcagaactcttgtgttgagttcaataggagacaaaccaatgaggtcgctcatgaattagc 34905641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 380
Target Start/End: Complemental strand, 8703716 - 8703449
Alignment:
Q  110 atgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagaca 209  Q
    |||| |||||||| ||||||| |||||| |||||||||  ||| |||||| | || ||||||||||   | ||| | ||||  ||   |||||||| |||    
T  8703716 atgttgattttgcacttgattgtaaaagagttgttgatagtgtcaattcaaacattgatgatagtaccgaatttgggtgtaatattcctgcttgtaaaca 8703617  T
Q  210 gttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcct 309  Q
    |||| || | ||||| ||   |||||||||||| | ||| || | ||||||| ||||| |||| ||| ||| ||||| |||| |||||| || |||| ||    
T  8703616 gttgatagtgaatagatttcggaactctcatgttgtgttcaacacgaggcaagcgaatagggtagcttacgggttagatcaggcaaccctatctaattct 8703517  T
Q  310 agatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttc 380  Q
    ||  || || ||||   |||||||||||| | |||| |||| |||||| ||||| ||||||||||| ||||    
T  8703516 agcacctatattat---tgatgtaccctcatatatttgacatattttaactaataaaatacaatgaatttc 8703449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 41197458 - 41197400
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    |||||||| |||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  41197458 agaactcttatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagct 41197400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 278
Target Start/End: Original strand, 34414 - 34578
Alignment:
Q  113 tggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagacagtt 212  Q
    ||||| |||| |||||||||||||| ||  | ||| || | || ||| |||||| ||||| |||| | ||| |||||||  ||| | ||||||||||  |    
T  34414 tggatgttgcccttgattctaaaagagtcatagatcattttaagtcaaatatagttgataatagtgaatttggttgtatg-tatctacttgtagacaact 34512  T
Q  213 gttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    |||  | ||||||||  ||||||||||||||||||||||||||| |||| | |||  |||||||||    
T  34513 gtttatcaatagttttcagaactctcatgtcgagtttaataggaagcaagccaatatggtcgctca 34578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 14857022 - 14856953
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccat 301  Q
    |||||||||||||||||||||| ||||||||| |||| | ||||||| || |||||| || || ||||||    
T  14857022 aactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaattagctaaggcatccccat 14856953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 29985437 - 29985498
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcag 291  Q
    ||||||||||||||||||| ||||| || ||| | |||| ||||| ||||||||||||||||    
T  29985437 agaactctcatgtcgagttcaatagaagacaagctaatgaggtcgttcacgagttagctcag 29985498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 375
Target Start/End: Complemental strand, 33368074 - 33367874
Alignment:
Q  174 tagttagtttagttgtatcatatatgcttgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtc 273  Q
    |||| ||||||||||||| || | || ||||||||  |||||||  ||||||||  | |||||||||||||||||||||| |||| ||   || | |||     
T  33368074 tagtaagtttagttgtattatttctgtttgtagacgtttgttacaaaatagtttttaaaactctcatgtcgagtttaatatgaggtaagtaaaagaggtt 33367975  T
Q  274 gctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaat 373  Q
    ||| |||||||||| ||  ||   |  || |||| |||  ||||| ||||||||||||  ||||| |||||| ||||| |||||| ||||||||| ||||    
T  33367974 gcttacgagttagcgcatgcaggtcttttaaatcttagcccccatattatagatgatgctccctcatgtatt-gacacgttttagataatgaaatgcaat 33367876  T
Q  374 ga 375  Q
    ||    
T  33367875 ga 33367874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 11619229 - 11619193
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||||||||||    
T  11619229 aactctcatgtcgagtttattaggaggcaaacgaatg 11619193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 32163060 - 32163121
Alignment:
Q  202 tgtagacagttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaac 263  Q
    |||||||||||||| |   |||||||  | ||||||||| ||||||||||||||||||||||    
T  32163060 tgtagacagttgtttcaggatagttttcaaaactctcatatcgagtttaataggaggcaaac 32163121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 8724719 - 8724755
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  8724719 aactctcatgtcgagtttactaggaggcaagcgaatg 8724755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 13065528 - 13065492
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  13065528 aactctcatgtcgagtttactaggaggcaagcgaatg 13065492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 30376527 - 30376471
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    |||||| |||||||||| |||||||||||| | ||| |||||||||| || ||||||    
T  30376527 aactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagct 30376471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 19047098 - 19047153
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagc 287  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||||| |||||    
T  19047098 aactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcacgaattagc 19047153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 942702 - 942860
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    |||||||| |||||||||| |||||||||||| | |||||||||||||  || ||||||  ||||||||||| | || |||  ||||| |||   |||||    
T  942702 agaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctaggacaaccccatctcatgctatctcccacgtttacgatga 942801  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttctttaa 388  Q
    |||||| || |||||  || || |  |||||||||||| ||||||| ||| ||| ||||    
T  942802 tgtaccgtcatgtatccgaaacttgatagctaatgaaaaacaatgaattttttccttaa 942860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 383
Target Start/End: Original strand, 11657643 - 11657796
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcctagatcccatgttatagatga 329  Q
    ||||||||||||| ||||| |   |||||||| | ||| |||| ||||||||||||||| ||  | ||| || |||||||||  | ||||| || |||||    
T  11657643 agaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagcttaggtagccctatctaatcctagccctcatgtgattgatga 11657742  T
Q  330 tgtaccctcgtgtattagacacattttagctaatgaaatacaatgagtttcttc 383  Q
    ||||||  | | |||| | || ||||||||||||||||| |||||| |||||||    
T  11657743 tgtacctacatatatttggcatattttagctaatgaaatgcaatgattttcttc 11657796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 4513081 - 4513127
Alignment:
Q  230 agaactctcatgtcgagtttaataggaggcaaacgaatggggtcgct 276  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||    
T  4513081 agaactctcatgtcgagttcaataggaggcaagccaatggggtcgct 4513127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 13757601 - 13757545
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||| |||||||||| || |||||| |||| |||||||||||| ||||||    
T  13757601 aactctcatgttgagtttaataagaagcaaactaatgaggtcgctcacgaattagct 13757545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 15950809 - 15950865
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagct 288  Q
    ||||||||||||||||||| |||||||||| | |||| ||| ||||| || ||||||    
T  15950809 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagct 15950865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 375
Target Start/End: Complemental strand, 255588 - 255323
Alignment:
Q  109 aatgtggattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagtagttagtttagttgtatcatatatgcttgtagac 208  Q
    ||||| ||||||| ||||||||  |||||| ||||||||||||| |||||   | |||| ||||||||  ||||| | ||||| ||   |||||||| ||    
T  255588 aatgtagattttgttcttgattgcaaaagg-ttgttgattatgtcaattctagtctagaagatagtagcgagtttggatgtattatcactgcttgtaaac 255490  T
Q  209 agttgttacttaatagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctcacgagttagctcagacaaccccatttaatcc 308  Q
    || || || || |||| ||  |||| |||||||| ||||| |   |||||||| | ||| |||| ||||||| |||||||||| || ||| || ||||||    
T  255489 agctgctagttgatagatttcagaattctcatgttgagttcagccggaggcaagcaaatagggtagctcacgggttagctcaggcagccctatctaatcc 255390  T
Q  309 tagatcccatgttatagatgatgtaccctcgtgtattagacacattttagctaatgaaatacaatga 375  Q
    |||  ||||| | || |||||| ||||  | |||||| | || | |||| |||||||||| ||||||    
T  255389 tagcccccatatgattgatgatatacctacatgtatttggcatactttatctaatgaaatgcaatga 255323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 48102 - 48159
Alignment:
Q  221 atagtttaaagaactctcatgtcgagtttaataggaggcaaacgaatggggtcgctca 278  Q
    |||||||  ||||||||||||||||||| |||||||||||||| |||  |||||||||    
T  48102 atagtttgcagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctca 48159  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 234771 - 234735
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||||||||||    
T  234771 aactctcatgtcgagtttattaggaggcaaacgaatg 234735  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 2294 - 2258
Alignment:
Q  232 aactctcatgtcgagtttaataggaggcaaacgaatg 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  2294 aactctcatgtcgagtttactaggaggcaagcgaatg 2258  T

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