View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7789_low_4 (Length: 397)
Name: NF7789_low_4
Description: NF7789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7789_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 30508939 - 30509320
Alignment:
| Q |
19 |
cccaccagcactaaagatctgctcagctgcagatattaaaactggattttctgcgcctacaatctatcaacagaattttcatcagatacactaacatata |
118 |
Q |
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| T |
30508939 |
cccaccagcactaaagatctgctcagctgcagatattaaaactggattttctgcgcctacaatctatcaacaaaattttcatcagatacactaacatata |
30509038 |
T |
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| Q |
119 |
ggcaacaaaaatcaaatcatttctgtttgcaatgtaagagaacctaaaaggcaagaaggctcagtagacaataagaatgaccagtattgtcaaatagccg |
218 |
Q |
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| T |
30509039 |
ggcaacaaaaatcaaatcatttctgtttgcaatgtaagagaacctaaaaggcaagaaggctcagtagacaataagaatgaccagtattgtcaaatagccg |
30509138 |
T |
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| Q |
219 |
ctattgcggtactatagcactatagtgtagtggaattcaaaaacggataattaaaagaacaataa------------ctgtttcaaattactgaacaatc |
306 |
Q |
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| T |
30509139 |
ctattgcggtactatagcactatagtgtagtggaattcaaaaacggataattaaaagaacaataagcaaagaatgttctgtttcaaattactgaacaatc |
30509238 |
T |
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| Q |
307 |
ggtatcattatcattttctggtctgttgaagtcaacagaacaaaagaaaaactcaaacagacaa-acaggacacaagtataa |
387 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
30509239 |
ggtatcatcatcattttctggtctgttgaagtcaacagaacaaaagaaaaactcaaacagacaagacaggacacaattataa |
30509320 |
T |
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