View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7789_low_5 (Length: 390)
Name: NF7789_low_5
Description: NF7789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7789_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 93 - 371
Target Start/End: Original strand, 41791588 - 41791866
Alignment:
| Q |
93 |
aaagcaaaccgagcacccatcagggaactttgaagagaccaatttccaatggcttctccctcaacgattgggggatagttgtcttgaagggaacccgtcc |
192 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41791588 |
aaagcaaacccagcacccatcagggaactttgaagagaccaatttccaatggtttctccctcaacgattgggggatagttgtcttgaagggaactcgtcc |
41791687 |
T |
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| Q |
193 |
tcagttcggattgtaggctgcaactcgcctacatgaatccggaattgctagtaatcgccggtcagccatacggcggtgaattcgttcccgggccttgtac |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41791688 |
tcagttcggattgtaggctgcaactcgcctacatgaagctggaattgctagtaatcgccggtcagccatacggaggtgaattcgttcccgggccttgtac |
41791787 |
T |
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| Q |
293 |
acaccgtccgtcacactatgggagctggccatgcctgaagtcgttaccttaaccgcaaggagggggatgccgaaggcag |
371 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41791788 |
acaccgcccgtcacactatgggagctggccatgaaagaagtcgttaccttaaccgcaaggagggggatgccaaaggcag |
41791866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 41791434 - 41791520
Alignment:
| Q |
8 |
acattattcttgccaactaatgaattacattatacttcgtgtctcctaagttcccaaacgtattcaaaataatatcccaacttccaa |
94 |
Q |
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| T |
41791434 |
acattgttcttgccaactaatgaattacattatccttcgtgtctcctaagttcccaaacgtattcaaaataatatcccaacttccaa |
41791520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 184 - 371
Target Start/End: Original strand, 490132 - 490319
Alignment:
| Q |
184 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaatccggaattgctagtaatcgccggtcagccatacggcggtgaattcgttcccgg |
283 |
Q |
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| T |
490132 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaagccggaatcgctagtaatcgccggtcagccatacggcggtgaattcgttcccgg |
490231 |
T |
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| Q |
284 |
gccttgtacacaccgtccgtcacactatgggagctggccatgcctgaagtcgttaccttaaccgcaaggagggggatgccgaaggcag |
371 |
Q |
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| T |
490232 |
gccttgtacacaccgcccgtcacactatgggagctggccatgcccgaagtcgttaccttaaccgcaaggagggggatgccgaaggcag |
490319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 15525680 - 15525635
Alignment:
| Q |
184 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaa |
229 |
Q |
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| T |
15525680 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaa |
15525635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 184 - 371
Target Start/End: Complemental strand, 13224043 - 13223856
Alignment:
| Q |
184 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaatccggaattgctagtaatcgccggtcagccatacggcggtgaattcgttcccgg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13224043 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaagccggaatcgctagtaatcgccggtcagcaatacggcggtgaattcgttcccgg |
13223944 |
T |
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| Q |
284 |
gccttgtacacaccgtccgtcacactatgggagctggccatgcctgaagtcgttaccttaaccgcaaggagggggatgccgaaggcag |
371 |
Q |
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| T |
13223943 |
gccttgtacacaccgcccgtcacactatgggagctggccatgcccgaagtcgttaccttaaccgcaaggagggggatgccgaaggcag |
13223856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 184 - 369
Target Start/End: Complemental strand, 187477 - 187291
Alignment:
| Q |
184 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaatccggaattgctagtaatcgccggtcagccatacggcggtgaattcgttcccgg |
283 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
187477 |
aacccgtcctcagttcggattgcaggctgcaactcgcctgcatgaagcaggaatcgctagtaatcgccggtcagccatacggcggtgaatccgttcccgg |
187378 |
T |
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| Q |
284 |
gccttgtacacaccgtccgtcacactatgggagctggccatgcctgaagtcgtta-ccttaaccgcaaggagggggatgccgaaggc |
369 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||||||| ||||| |
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| T |
187377 |
gccttgtacacaccgcccgtcacactataggagctggccatgtttgaagtcattacccttaaccgtaaggagggggatgcctaaggc |
187291 |
T |
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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 20737690 - 20737742
Alignment:
| Q |
184 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaatccggaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20737690 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaagccggaa |
20737742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 12332292 - 12332343
Alignment:
| Q |
320 |
gccatgcctgaagtcgttaccttaaccgcaaggagggggatgccgaaggcag |
371 |
Q |
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| T |
12332292 |
gccatgcccgaagtcgttaccttaaccgcaaggagggggatgccgaaggcag |
12332343 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 15002645 - 15002594
Alignment:
| Q |
184 |
aacccgtcctcagttcggattgtaggctgcaactcgcctacatgaatccgga |
235 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
15002645 |
aacccgtcctcagttcggaatgtaggctgcaactcacctacatgaagccgga |
15002594 |
T |
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