View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7789_low_8 (Length: 244)
Name: NF7789_low_8
Description: NF7789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7789_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 44691913 - 44692106
Alignment:
| Q |
1 |
cgtgcattgttctcaaatttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattc |
100 |
Q |
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| T |
44691913 |
cgtgcattgttctaaaatttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattc |
44692012 |
T |
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| Q |
101 |
aataccgtgccttggcaaacaaggcaaacgatgcattttacaaacttagcaacacaaggaaacaaattcaagcttatgtttttgatggtataaa |
194 |
Q |
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| T |
44692013 |
aataccgtgccttggcaaacaaggcaaacgatgcattttacaaacttagcaacacaaggggccagattcaagcttatgtttttgatggtataaa |
44692106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 44653240 - 44653461
Alignment:
| Q |
2 |
gtgcattgttctcaaatttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattca |
101 |
Q |
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| T |
44653240 |
gtgcattttcctcacatttttccattgaatcagtgttgatttgttttaa---tatttgcttgcaggataacgtctttgtcaatgttgttgcttctattca |
44653336 |
T |
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| Q |
102 |
ataccgtgccttggcaaacaaggcaaacgatgcattttacaaacttagcaacacaaggaaacaaattcaagcttatgtttttgatggtataaactttaaa |
201 |
Q |
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| T |
44653337 |
ataccgggccttggcagacaaggcgaatgatgcattttacaaacttagcaacacaagaaaccaaattcaagcttatgtttttgatggtataaactataaa |
44653436 |
T |
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| Q |
202 |
caataactctgcttagcaatacata |
226 |
Q |
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| T |
44653437 |
ccataaccctgcttagcagtacata |
44653461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 44682304 - 44682470
Alignment:
| Q |
60 |
cttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggcaaacaaggcaaacgatgcattttacaaacttagcaacacaagg |
159 |
Q |
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| T |
44682304 |
cttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggcagacaaggctaatgatgcattttacaaacttagcaacacaaga |
44682403 |
T |
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| Q |
160 |
aaacaaattcaagcttatgtttttgatggtataaactttaaacaataactctgcttagcaatacata |
226 |
Q |
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| T |
44682404 |
aaccaaattcaagcttatgtttttgatggtataaactataaaccataaccctgcttagcagtacata |
44682470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 44631785 - 44631964
Alignment:
| Q |
17 |
atttttccatggaataaatgttgatttgttt-aatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttgg |
115 |
Q |
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| T |
44631785 |
atttttcgattgaattaatgttgattggttttaatatttatttgcttgcaggataatgtctttgtcaacgttgttgcttctattcaataccgtgccttgg |
44631884 |
T |
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| Q |
116 |
caaacaaggcaaacgatgcattttacaaacttagcaacacaaggaaacaaattcaagcttatgtttttgatggtataaac |
195 |
Q |
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| T |
44631885 |
cagacaaggctaatgaggcattttacaaacttagcaacacaaggggccaaattcaagcttatgtttttgatggtataaac |
44631964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 44637114 - 44636936
Alignment:
| Q |
18 |
tttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgccttggca |
117 |
Q |
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| T |
44637114 |
tttttccaatgaattaatgttgattggtttaatatttatttgcttgtaggataatgtctttgtgaacgtcgttgcttctattcaataccgtgccttggca |
44637015 |
T |
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| Q |
118 |
aacaaggcaaacgatgcattttacaaacttagcaacacaaggaaacaaattcaagcttatgtttttgatggtataaact |
196 |
Q |
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|||| || || |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
44637014 |
gacaacgccaatgatgcattttacaaacttagtaacacaaggtcccagattcaagcttatgtttttgatggtataaact |
44636936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 17531232 - 17531140
Alignment:
| Q |
18 |
tttttccatggaataaatgttgatttgtttaatatttatttgcttgcaggataatgtctttgtcaatgttgttgcttctattcaataccgtgc |
110 |
Q |
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| T |
17531232 |
tttttccattgaattaaggttgactggtttaatatttatttgcttgcaggataatgtatttgtcaatattgttccttctctgcaataccgtgc |
17531140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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