View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7790_high_1 (Length: 613)

Name: NF7790_high_1
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7790_high_1
NF7790_high_1
[»] chr6 (11 HSPs)
chr6 (99-223)||(14044493-14044617)
chr6 (418-598)||(14020191-14020369)
chr6 (445-598)||(13475752-13475905)
chr6 (238-319)||(13930401-13930482)
chr6 (498-598)||(14108462-14108562)
chr6 (17-97)||(14044249-14044329)
chr6 (17-95)||(13930070-13930147)
chr6 (262-303)||(14044622-14044663)
chr6 (238-288)||(13476292-13476342)
chr6 (119-176)||(13930348-13930405)
chr6 (330-382)||(13476233-13476285)
[»] chr3 (1 HSPs)
chr3 (460-513)||(24786856-24786909)
[»] chr5 (1 HSPs)
chr5 (562-598)||(40816209-40816245)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 14044493 - 14044617
Alignment:
Q  99 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagtactaactccctccctaaagata 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14044493 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgcaaagtactaactccctccctaaagata 14044592  T
Q  199 ttattgccattctttctaaacagag 223  Q
    |||||||||||||||||||||||||    
T  14044593 ttattgccattctttctaaacagag 14044617  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 418 - 598
Target Start/End: Original strand, 14020191 - 14020369
Alignment:
Q  418 ttggctgtctttatcgcttctaatgttgatgcggtagattcattacctgaagtctgcacttgagttttagacgaacctttgatagtaatgacagacaacg 517  Q
    |||||||||||| ||| |||| |||||| || |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  14020191 ttggctgtctttgtcgattctcatgttgttgtggtatattcattacctgaagtatgcacttgagttttagatgaacctttgatagtaacgacagacaacg 14020290  T
Q  518 aaggaacgaactataagtcacattttcattacctgaggtctgtgtcattttaatagaacttatgggaggtgagtgtaattt 598  Q
    |||||| |||||| |||||||||||||||||||||| ||| || |  ||||||||||||||||||||||||||||||||||    
T  14020291 aaggaatgaactagaagtcacattttcattacctgaagtccgtat--ttttaatagaacttatgggaggtgagtgtaattt 14020369  T

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Target: chr6; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 445 - 598
Target Start/End: Complemental strand, 13475905 - 13475752
Alignment:
Q  445 gatgcggtagattcattacctgaagtctgcacttgagttttagacgaacctttgatagtaatgacagacaacgaaggaacgaactataagtcacattttc 544  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||    
T  13475905 gatgtggtagattcattacctgaagtctgcacttgagttttagatgaacctttgatagtaatgatagacaacgaagaaacgaactagaagtcgcattttc 13475806  T
Q  545 attacctgaggtctgtgtcattttaatagaacttatgggaggtgagtgtaattt 598  Q
    ||||||| | |||||||| ||||||||||||| || ||||||||||||||||||    
T  13475805 attacctaaagtctgtgtaattttaatagaacatacgggaggtgagtgtaattt 13475752  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 13930401 - 13930482
Alignment:
Q  238 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattcttacatgttgtgttaagttttactctcatgtata 319  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13930401 aaagttgcaaacagagtgcaaaacaaattctacattaacgataggttcttacatgttgtgttaagttttactctcatgtata 13930482  T

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Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 498 - 598
Target Start/End: Original strand, 14108462 - 14108562
Alignment:
Q  498 gatagtaatgacagacaacgaaggaacgaactataagtcacattttcattacctgaggtctgtgtcattttaatagaacttatgggaggtgagtgtaatt 597  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||    
T  14108462 gatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctgaagtctgtatccttttaatagaacttatgggaggtgagtgtaatt 14108561  T
Q  598 t 598  Q
    |    
T  14108562 t 14108562  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 14044249 - 14044329
Alignment:
Q  17 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaactaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14044249 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagatgtggataacaagacagtctgtcacaaactaca 14044329  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 13930070 - 13930147
Alignment:
Q  17 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaacta 95  Q
    |||||||||||||||  |||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13930070 gaaacagacggaggcggcggcgccaca-caaatagttcgtcacatagcggtggataataagacagtctgtcacaaacta 13930147  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 14044622 - 14044663
Alignment:
Q  262 aaattctacattaacgatagattcttacatgttgtgttaagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14044622 aaattctacattaacgatagattcttacatgttgtgttaagt 14044663  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 13476342 - 13476292
Alignment:
Q  238 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattctta 288  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  13476342 aaagttgcagacagagtgcgaaaccaattctacattaacgatagattctta 13476292  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 13930348 - 13930405
Alignment:
Q  119 aatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagt 176  Q
    ||||||||||||||||| || |||||||| |||||||||| |||||||||||| ||||    
T  13930348 aatctgcaatgaatgagctcttaatcttccactaacagagagtgaaaaaatgcaaagt 13930405  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 13476285 - 13476233
Alignment:
Q  330 agatgactgtgaactttgaagatgtatcacggaagaagataaaaatgtattac 382  Q
    ||||||| || | ||||||||||||| ||||||| ||||||||||||||||||    
T  13476285 agatgacagtaatctttgaagatgtaccacggaaaaagataaaaatgtattac 13476233  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 24786856 - 24786909
Alignment:
Q  460 ttacctgaagtctgcacttgagttttagacgaacctttgatagtaatgacagac 513  Q
    ||||||| ||||| |||||| |||||| | |||| |||||||||||||||||||    
T  24786856 ttacctgcagtctacacttgcgttttatatgaacatttgatagtaatgacagac 24786909  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 598
Target Start/End: Complemental strand, 40816245 - 40816209
Alignment:
Q  562 tcattttaatagaacttatgggaggtgagtgtaattt 598  Q
    |||||||||||||||||| |||||||||||| |||||    
T  40816245 tcattttaatagaacttaggggaggtgagtgcaattt 40816209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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