View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_high_17 (Length: 266)
Name: NF7790_high_17
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 6083499 - 6083267
Alignment:
| Q |
19 |
aaattggacttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatc |
118 |
Q |
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| T |
6083499 |
aaattggacttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatc |
6083400 |
T |
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| Q |
119 |
aatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaattttcaa |
218 |
Q |
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| T |
6083399 |
aatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaattttcaa |
6083300 |
T |
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| Q |
219 |
tcacagttttagcaagccttttacttttctctg |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6083299 |
tcacagttttagcaagccttttacttttctctg |
6083267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 39107915 - 39108062
Alignment:
| Q |
27 |
cttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatcaatgcatt |
126 |
Q |
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|||||||||| || || || ||||||| ||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||| || ||||| |||| | |
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| T |
39107915 |
cttcatttcggatctccagctccttttcaagtactcggacctcatatgtcagagaagcattatctttctcagtggactctaatctaaccatcagtgcact |
39108014 |
T |
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| Q |
127 |
acgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaa |
174 |
Q |
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| T |
39108015 |
atgatctgcctcagcttgagtcaattgtcttttcagatcctcaatcaa |
39108062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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