View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_high_8 (Length: 401)
Name: NF7790_high_8
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 25696164 - 25695892
Alignment:
| Q |
1 |
tcatccacctgtttgatgaaattacacaaagaagnnnnnnnntagttagacagcaaaaacaatgatagaatttgaaagctcctagcaccaactggtatct |
100 |
Q |
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| T |
25696164 |
tcatccacctgtttgatgaaattacacaaagaagaaaaaaaatagttagacagcaaaaacaatgatagaatttgaaagctcctagcaccaactggtatct |
25696065 |
T |
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| Q |
101 |
gacacgacactgatacatgtaattacgttgaannnnnnnnccttcaaattattcctatatagatatgtcaatgttagtgtcgtgtcaaatgaccatacat |
200 |
Q |
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| T |
25696064 |
gacacgacactgatacatgtaattatgttgaattttttttccttcaaattattcctatatacatatgtcaatgt-agtgtcgtgtcaaatgaccatacat |
25695966 |
T |
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| Q |
201 |
gtttgtgtctgtgtcggtgtttcatagtttgacgattgaagggaaattgagaagtgggttggtgatggggtgtg |
274 |
Q |
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| T |
25695965 |
gtttgtgtctgtgtcagtgtttcatagtttgacgattgaagggaaattgagaagtgggttggtgatggggtgtg |
25695892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 25695827 - 25695778
Alignment:
| Q |
339 |
caatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaa |
388 |
Q |
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| T |
25695827 |
caatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaa |
25695778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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