View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7790_high_9 (Length: 377)
Name: NF7790_high_9
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 188 - 362
Target Start/End: Complemental strand, 36970397 - 36970223
Alignment:
| Q |
188 |
ttctgtgcttcttatggtataaactattaagaatgaacaggatatagtacatcattgatataaaaacattaatatatagatctgtgatgtttaatctgcg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36970397 |
ttctgtgcttcttatggtataaactattaagaatgaacaggatatagtacatcattgatataaaaacattaatatatagatctgtgatgtttaatctgct |
36970298 |
T |
|
| Q |
288 |
ctgagcatatgttgatcaagacatatatagttgtgctaattagcacaaattaaaggtaatttttgcagaaggtat |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36970297 |
ctgagcatatgttgatcaagacatatatagttgtgctaattagcacaaattaaaggtaatttttgcagaaggtat |
36970223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 36970573 - 36970419
Alignment:
| Q |
8 |
ttggagttcatttgtagttcctttccttttctgaagatggaatcaatgaagaagaacatttctaattttgttggatgtatgtgaggtaattaatttactt |
107 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36970573 |
ttggagttaatatgtagttcctttccttttctgaagatggaatcaatgaagaagaacatttctaattttgttggatgtatgtgaggtaattaatttactt |
36970474 |
T |
|
| Q |
108 |
gcaaattaaaattaaggggctttcctttcttctatctttgatataaagcactgta |
162 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36970473 |
gcaaattaaaattaaggtgctttcctttcttctatctttgatataaagcactgta |
36970419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University