View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_1 (Length: 991)
Name: NF7790_low_1
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 759 - 977
Target Start/End: Original strand, 22716749 - 22716967
Alignment:
| Q |
759 |
tagtacctgtttgagaggaattttgttagccagatgagaagactctgtcccaatagagaggacatttgaaattctcttgctttttgtattacttctgatg |
858 |
Q |
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| T |
22716749 |
tagtacctgtttgagaggaattttgttagccagataagaagactctgtcccaatagagaggacatttgaaattctcttgctttttgtattacttctgatg |
22716848 |
T |
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| Q |
859 |
tcgtttgctctagaatttgatgttgaacgaatgtttatatctgatgtctttggaggccttttgaatcttgaactaaactttttatttgcatctttcttac |
958 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
22716849 |
tcgtttgctctagaatttgatgttgaactaatgtttatatctgatgtctttggaagccttttgaatcttgaactaaacttttcattggcatctttcttac |
22716948 |
T |
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| Q |
959 |
attttgacactaatttctt |
977 |
Q |
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||||||||||||||||||| |
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| T |
22716949 |
attttgacactaatttctt |
22716967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 419 - 701
Target Start/End: Original strand, 22716402 - 22716691
Alignment:
| Q |
419 |
tgacatagtaaaatatttccccattttcatttttcttcttaaataagattgttaaatgnnnnnnnnn--aaactcgatatctaatacaagggttgattaa |
516 |
Q |
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| T |
22716402 |
tgacatagtaaaatatttccccattttcatttttcttcttaaataagattgttaaatgttttttttttaaaactcgatatctgatgcaggggttgattaa |
22716501 |
T |
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| Q |
517 |
tcatattgttaaatgttacgaatagtaaaatgcttgttttttatgaaagaattgtcaaatgttaaggatggtgtgaatgcttgnnnnnnncaatatcata |
616 |
Q |
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| T |
22716502 |
tcatattattaaatgtttcgaatagtaaaatgcttgttttttatggaagaattgttaaatgttaaggatggtgtgaatgcttg-ttttttcaatatcata |
22716600 |
T |
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| Q |
617 |
gtaaaatgtgtattttaa------ttctaaaatacacaatagaaaaataaattacatatgaagatgagggtattagagtaatgtgactttc |
701 |
Q |
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| T |
22716601 |
gtaaaatgtgtattttaattatttttctaaaatacacaatagaaaaataaattacatatgaagatgagggtattagagtaatgtgactttc |
22716691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 22716037 - 22716183
Alignment:
| Q |
20 |
gtggcaccgttaaatttgtcttctattactttggtgcttggttcttgattggagagtgtgactgttccttcttgtttgtacctttgtctcgaacaactag |
119 |
Q |
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| T |
22716037 |
gtggcaccgttaaatttgtcttctattactttggtgcttggttcttgattggagagtgtgaccgttccttcttgtttgtacctttgtctcgaacaactag |
22716136 |
T |
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| Q |
120 |
ataactgtgagcagagtttgaggtcttgagtttcagatacctgtgac |
166 |
Q |
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| T |
22716137 |
ataactgtgggcagagtttggagtcttgagtttcagatacctgtgac |
22716183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 191 - 341
Target Start/End: Original strand, 22716209 - 22716361
Alignment:
| Q |
191 |
ggtaagcaacatgaaaatacaaatggttagaaaaagcaaagaagattttaacttttattttaatgtacctnnnnnnngattaactg--ttttttattact |
288 |
Q |
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| T |
22716209 |
ggtaagcaacatgaaaatacaaatggttagaaaaagcaaagaagattttaacttttattttaatgaacctgaaaaaagattaactgttttttttattact |
22716308 |
T |
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| Q |
289 |
aatttactatgatggtgaaatacaatgttgtacatggaaggaaaaatgtgcta |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22716309 |
aatttactatgatggtgaaatacaatgttgtacatggaagggaaaatgtgcta |
22716361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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