View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_13 (Length: 361)
Name: NF7790_low_13
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 19192117 - 19192450
Alignment:
| Q |
18 |
accatcattctagcatatccattataatttgaaacgcgcacacacaatgatattgtaacaagtcaagaaaaagaatgttgcatctagtacacctagcaac |
117 |
Q |
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| T |
19192117 |
accatcattctagcatacccattgtaatttgaaacac--acacccaatgatattgtaacaagtcaggaaaaaaaatgttacatccagtacacctagcaa- |
19192213 |
T |
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| Q |
118 |
aatagtcaaaataaaatttcttttattctattttcattttatctcattcattaagtgtcacacattctcacccattttcaccatggaacttcactctctt |
217 |
Q |
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| T |
19192214 |
--tagtcaaaataaaatttcttttattctattttcattttatctcattcattaagtgtcacacattctcacccattttcaccgtggaacttgactctctt |
19192311 |
T |
|
| Q |
218 |
caccgtcgaactctcactataatcattctcatattcacccatcgagcttcacacgaactctcaattgaaccattgaacttcactctttcttcatcttcac |
317 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19192312 |
caccgtggaactctcactatactcattctcatattcacccatcgagcttcacacgaactctcacttgaaccattgaacttcactctttcttcatcttcac |
19192411 |
T |
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| Q |
318 |
catcgaacttcaccgatttgcatccacaatattcttcga |
356 |
Q |
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| T |
19192412 |
catcgaacttcaccgatttgcatccacaacattgttcga |
19192450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 14676885 - 14676848
Alignment:
| Q |
100 |
tctagtacacctagcaacaatagtcaaaataaaatttc |
137 |
Q |
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| T |
14676885 |
tctagtacaccaagcaacaatagtaaaaataaaatttc |
14676848 |
T |
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