View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_14 (Length: 359)
Name: NF7790_low_14
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 39851670 - 39851371
Alignment:
| Q |
1 |
aataccagtaagcaagcattaaaaatcaacaatcacacaacca-ctaactacaaggaatttcactcaagctatcatgctatgaaagaaatagagttaata |
99 |
Q |
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| T |
39851670 |
aataccagtaagcaagcattaaaaatcaacaatcacacaaccaactaactacaaggaatttcactcaagctatcatgctatgaaagaaatagagttaata |
39851571 |
T |
|
| Q |
100 |
gacttggcctgatatagggaatcatgatgaatgttttgaagtctcaacaaaacgaaaatgtgaataagatgtctgtcacttctaatatccaacacgccga |
199 |
Q |
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| T |
39851570 |
g----------------ggaatcatgatgaatgttttgaagtctcaacaaaacgaaaatgtgaataagatgtctgtcacttctaatatccaacacgccga |
39851487 |
T |
|
| Q |
200 |
gatgttttttgagaattagtgctagtgaataataagataaataaaataatatgtaacaagttaagatgttatgagaataagtgctagtgagtaatgaaat |
299 |
Q |
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| T |
39851486 |
gatgttttttgtgaattagtgctagtgaataataagataaataaaataatatgtaacaagttaagatgttatgagaataagtgctagtgagtaatgaaat |
39851387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 38634665 - 38634373
Alignment:
| Q |
11 |
agcaagcattaaaaatcaacaatcacacaaccactaactacaaggaatttcactcaagctatcatgctatgaaagaaatagagttaatagacttggcctg |
110 |
Q |
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| T |
38634665 |
agcaagcattaaaaatcaacaatcaca-acctgctaactacaaggaat----cacaagttattatgctataaaaggagtagagttaaaagacttgttcta |
38634571 |
T |
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| Q |
111 |
atatagggaatcatgatgaatgttttgaagtctcaacaaaacg---aaaatgtgaataagatgtctgtcacttctaatatccaacacgccgagatgtttt |
207 |
Q |
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| T |
38634570 |
gtatagg-aatcatgatgaatgttttgaagtctaaactaaatggaaaaaatgtgaataagatgtttgtcacctctaacattcaacatgctgagatgtttt |
38634472 |
T |
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| Q |
208 |
t---------------tgaga-attagtgctagtgaataataagataaataaaataatatgtaacaagttaagatgttatgagaataagtgctagtgag |
290 |
Q |
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| T |
38634471 |
tgcacactcaacatgctgagatgtttttgcttgtgaataataagataaatgaaataaagtgtaacaagttaagatgttttgaaaataagtgctagtgag |
38634373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 38452107 - 38452175
Alignment:
| Q |
117 |
ggaatcatgatgaatgttttgaagtctcaacaaaac-gaaaatgtgaataagatgtctgtcacttctaa |
184 |
Q |
| |
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| T |
38452107 |
ggaatcatgatgaatagtttgaagtctaaactaaacagaaaatgtgaataagatgtttgtcacctctaa |
38452175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 34537951 - 34538016
Alignment:
| Q |
212 |
gaattagtgctagtgaataataagataaataaaataatatgtaacaagttaagatgttatgagaat |
277 |
Q |
| |
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|||| ||||||||||| |||||||||||| ||||||| || |||| ||||||||||| ||||||| |
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| T |
34537951 |
gaataagtgctagtgagtaataagataaacaaaataaactggaacaggttaagatgttttgagaat |
34538016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 38637534 - 38637465
Alignment:
| Q |
271 |
tgagaataagtgctagtgagtaatgaaatcc-aaaattgaaactgcagaatagagttcaaatgtaaaaag |
339 |
Q |
| |
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|||||||||||||||| | ||||||||||| |||||||||||| || ||||||||| ||||||||||| |
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|
| T |
38637534 |
tgagaataagtgctagaaaataatgaaatccaaaaattgaaactccaaaatagagttataatgtaaaaag |
38637465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 38452030 - 38452078
Alignment:
| Q |
11 |
agcaagcattaaaaatcaacaatcacacaacc-actaactacaaggaat |
58 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
38452030 |
agcaggcattaaaaatcaacaatcacacaaccaactaactataaggaat |
38452078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 38452240 - 38452281
Alignment:
| Q |
227 |
aataataagataaataaaataatatgtaacaagttaagatgt |
268 |
Q |
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||||||||||||||| |||||| |||||||||||||||||| |
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| T |
38452240 |
aataataagataaatgaaataaagtgtaacaagttaagatgt |
38452281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 44476082 - 44476027
Alignment:
| Q |
117 |
ggaatcatgatgaatgttttgaagtctcaacaaaac-gaaaatgtgaataagatgt |
171 |
Q |
| |
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||||| |||||||||| |||||||||||||| |||| |||||| |||||||||||| |
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| T |
44476082 |
ggaataatgatgaatgatttgaagtctcaactaaacggaaaatatgaataagatgt |
44476027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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