View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_15 (Length: 354)
Name: NF7790_low_15
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 404447 - 404113
Alignment:
| Q |
1 |
tccagctagaagtgttttaagtgagggcaatgtaaaaggaaaatgtgtgtccacagataagtgacaaagcttgagattaacaagggttgtacaacgcaga |
100 |
Q |
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| T |
404447 |
tccagctagaagtgttttaagtgagggcaatgtaaaaggaaaatttgtgtccacagataagtgacaaagcttgagattaacaagggttgtacaacgcaga |
404348 |
T |
|
| Q |
101 |
atgttggtaggaaagtgagctcgtctaggctcccaagtattgatagcatgaatagagagatacattatcagcatatatagttgacccatttgttgaggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
404347 |
atgttggtaggaaagtgagctcgtctaggctcccaagtattgatagcatgaatagagagatacattaacagcatatatagttgaaccatttgttgaggaa |
404248 |
T |
|
| Q |
201 |
tttgaaatgaatcgcattcaatgtcgaggaagaaactgttgatggaatgaaaaccaacgagttctcgctcaagaaacatggaggaaaaaatatggttgaa |
300 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
404247 |
tttgaaatgaattgtattcaatgtcgaggaagaaactgttgatggaatgaaaaccaacgagttctcgctcaagaaaaatggaggaaaaaatatggttgaa |
404148 |
T |
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| Q |
301 |
aagctgaagtctataacgggaacgaaaggccatag |
335 |
Q |
| |
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| T |
404147 |
acgctgaagtctataacgggaacgaaaggccatag |
404113 |
T |
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