View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_16 (Length: 326)
Name: NF7790_low_16
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 11530611 - 11530461
Alignment:
| Q |
3 |
tcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttcc |
102 |
Q |
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| T |
11530611 |
tcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttcc |
11530512 |
T |
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| Q |
103 |
ggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
153 |
Q |
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| T |
11530511 |
ggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11530461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 11556108 - 11555958
Alignment:
| Q |
3 |
tcgtgttttattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttcc |
102 |
Q |
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| T |
11556108 |
tcgtgttttattgctgtctcgattaaatcgtcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttcc |
11556009 |
T |
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| Q |
103 |
ggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
153 |
Q |
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| T |
11556008 |
ggaatttatcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11555958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 11555891 - 11555815
Alignment:
| Q |
237 |
caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgt |
313 |
Q |
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| T |
11555891 |
caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgt |
11555815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 11530213 - 11530169
Alignment:
| Q |
269 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgt |
313 |
Q |
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| T |
11530213 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgt |
11530169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 11556559 - 11556521
Alignment:
| Q |
19 |
tctcgattaaatcctcatacaaggtgttggaatgtttgt |
57 |
Q |
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| T |
11556559 |
tctcgattaaatcgtcatacaaggtgttggaaggtttgt |
11556521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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