View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_17 (Length: 321)
Name: NF7790_low_17
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 52 - 308
Target Start/End: Complemental strand, 34092854 - 34092598
Alignment:
| Q |
52 |
aattcctcctccagatcacaaactaaaaagaaatttctaatacctagtcaataaaagaatttggatggaagacgtgagagattcccttatggtagcagca |
151 |
Q |
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| T |
34092854 |
aattcctcctccagatcacaaactaaaaagaaatttctaatacctagtcaataaaagaatttggatggaagacgtgagagattcccttatggtagtagca |
34092755 |
T |
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| Q |
152 |
acagctcttgcatccttaacattccaaaattgtgcacatgatcatgatcaaatatgcaaagctggtactttagttctagcatttggtgatagcaaccaaa |
251 |
Q |
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| T |
34092754 |
acagctcttgcatccttaacattccaaaattgtgcacatgatcatgatcaaatatgcaaagctggtactttagttctagcatttggtgatagcaaccaaa |
34092655 |
T |
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| Q |
252 |
aattaatatatgaactttttatactttcatgtaccatatttaatatctttctctgct |
308 |
Q |
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| T |
34092654 |
aattaatatatgaactttttatactttcatgtaccatatttaatatctttctctgct |
34092598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 56 - 277
Target Start/End: Complemental strand, 34097003 - 34096789
Alignment:
| Q |
56 |
cctcctccagatcacaaactaaaaagaaatttctaatacctagtcaataaaagaatttggatggaagacgtgag-------agattcccttatggtagca |
148 |
Q |
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| T |
34097003 |
cctccttcagaccacaaactaaaaagaaatttctaa--------caataatagaatttggatggatgacatgagtcatgagagattcccttatggtagta |
34096912 |
T |
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| Q |
149 |
gcaacagctcttgcatccttaacattccaaaattgtgcacatgatcatgatcaaatatgcaaagctggtactttagttctagcatttggtgatagcaacc |
248 |
Q |
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| T |
34096911 |
gcaacagctcttgcatccttaacattccaaggttgtgcacatgatca------aatatgcaaagctagtactttagttttagcatttggtgatagcaacc |
34096818 |
T |
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| Q |
249 |
aaaaattaatatatgaactttttatactt |
277 |
Q |
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| T |
34096817 |
aaaaatttagatatgaactttttatactt |
34096789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 34090596 - 34090546
Alignment:
| Q |
196 |
tgatcaaatatgcaaagctggtactttagttctagcatttggtgatagcaa |
246 |
Q |
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| T |
34090596 |
tgatcaaacatgcaaagctggtacttcagttttagcctttggtgatagcaa |
34090546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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