View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_18 (Length: 321)
Name: NF7790_low_18
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 43637750 - 43638055
Alignment:
| Q |
1 |
cttgagtaacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatga |
100 |
Q |
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| T |
43637750 |
cttgagtaacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatga |
43637849 |
T |
|
| Q |
101 |
tgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtac |
200 |
Q |
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| T |
43637850 |
tgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtac |
43637949 |
T |
|
| Q |
201 |
catttggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaacccacaactattgataaaccaatgtgacaataaca |
300 |
Q |
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| T |
43637950 |
catttggatccccagctgggtccgtgcaccaaaaatcatcacctgcataaattaatgcatcacaacccacaactattgataaaccaatgtgacaataaca |
43638049 |
T |
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| Q |
301 |
tgttta |
306 |
Q |
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|||||| |
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| T |
43638050 |
tgttta |
43638055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 489068 - 488840
Alignment:
| Q |
17 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
116 |
Q |
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| T |
489068 |
ttgtgatttccaacagtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
488969 |
T |
|
| Q |
117 |
cccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttggatccccagc |
216 |
Q |
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| T |
488968 |
cccaatctggttggatgaaatttcccatccataagctattgtatgcacaatgcaccatgtgacatccttgtagccaatatgtaccatttggatcaccata |
488869 |
T |
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| Q |
217 |
tgggtccgtgcaccaaaaatcatcacctg |
245 |
Q |
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| T |
488868 |
tgggtcagtgcaccagaaatcatcacctg |
488840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 34697003 - 34697235
Alignment:
| Q |
8 |
aacttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagatt |
107 |
Q |
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| T |
34697003 |
aacttgaaattgtgattaccgacacaatcgctaacataaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggatt |
34697102 |
T |
|
| Q |
108 |
ggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtgacatccttgcaaccaatatgtaccatttgg |
207 |
Q |
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| T |
34697103 |
gaaacatgtcccaatctgggtgaatgaaatttcccatccataaactgttataggcacaatgtaccatgtgacaaccttggagccaatatgtaccatttgg |
34697202 |
T |
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| Q |
208 |
atccccagctgggtccgtgcaccaaaaatcatc |
240 |
Q |
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||| |||| ||| || | ||||| |||||||| |
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| T |
34697203 |
atcaccagatggatcagaacaccagaaatcatc |
34697235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 43562931 - 43563033
Alignment:
| Q |
75 |
cagcatgaaattcagaacaagcatgatgagattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccat |
174 |
Q |
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|||||||||||| || |||| |||| | ||||||||||||||||||||| ||| | || | | ||||||||||||||| || |||| |||||| | ||| |
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| T |
43562931 |
cagcatgaaatttagcacaaacatggttagattggaacatgtcccaatcaggtcgaatcatttgtcccatccataagctattgtaggaacaatgaatcat |
43563030 |
T |
|
| Q |
175 |
gtg |
177 |
Q |
| |
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||| |
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| T |
43563031 |
gtg |
43563033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 36430808 - 36430881
Alignment:
| Q |
104 |
gattggaacatgtcccaatctggttgtataaaatttcccatccataagctgttataggcacaatgcaccatgtg |
177 |
Q |
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|||||||||||||||||||| ||||| || | | ||||||||||||||| || |||| |||||| | |||||| |
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| T |
36430808 |
gattggaacatgtcccaatcaggttgaatcatttgtcccatccataagctattgtaggaacaatgaatcatgtg |
36430881 |
T |
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