View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7790_low_21 (Length: 273)

Name: NF7790_low_21
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7790_low_21
NF7790_low_21
[»] chr7 (9 HSPs)
chr7 (1-273)||(45418697-45418969)
chr7 (1-110)||(11642549-11642658)
chr7 (4-110)||(45286315-45286421)
chr7 (169-273)||(45286202-45286306)
chr7 (1-110)||(9141416-9141524)
chr7 (1-110)||(16375863-16375972)
chr7 (169-273)||(11642667-11642771)
chr7 (1-102)||(18415576-18415677)
chr7 (1-48)||(44584518-44584565)
[»] scaffold0013 (4 HSPs)
scaffold0013 (1-110)||(104531-104640)
scaffold0013 (1-110)||(127180-127289)
scaffold0013 (169-273)||(104418-104522)
scaffold0013 (169-273)||(127067-127171)
[»] chr4 (12 HSPs)
chr4 (1-110)||(29968123-29968232)
chr4 (1-110)||(18000699-18000808)
chr4 (169-273)||(41851412-41851516)
chr4 (4-110)||(41851297-41851403)
chr4 (169-273)||(2479576-2479680)
chr4 (169-273)||(18000817-18000921)
chr4 (169-273)||(29968010-29968114)
chr4 (5-102)||(2479462-2479559)
chr4 (1-102)||(50232194-50232295)
chr4 (1-56)||(47428201-47428256)
chr4 (1-98)||(56476035-56476132)
chr4 (8-52)||(10466643-10466687)
[»] chr8 (9 HSPs)
chr8 (3-110)||(1199402-1199509)
chr8 (169-273)||(1199289-1199393)
chr8 (169-273)||(30437355-30437459)
chr8 (1-56)||(604291-604346)
chr8 (44-110)||(30437280-30437346)
chr8 (1-56)||(44430676-44430731)
chr8 (1-56)||(44434240-44434295)
chr8 (1-56)||(44429483-44429538)
chr8 (2-72)||(37589425-37589495)
[»] chr5 (8 HSPs)
chr5 (169-273)||(14164750-14164854)
chr5 (1-110)||(19123055-19123164)
chr5 (1-110)||(14164632-14164741)
chr5 (1-110)||(31486414-31486523)
chr5 (1-110)||(7782082-7782191)
chr5 (169-273)||(7781969-7782073)
chr5 (169-273)||(19122935-19123046)
chr5 (1-102)||(21000936-21001037)
[»] chr2 (2 HSPs)
chr2 (1-110)||(20640227-20640336)
chr2 (169-273)||(20640345-20640449)
[»] chr1 (10 HSPs)
chr1 (1-110)||(38685301-38685410)
chr1 (1-110)||(11930885-11930994)
chr1 (1-110)||(23481081-23481190)
chr1 (169-273)||(23481199-23481303)
chr1 (1-87)||(5429192-5429278)
chr1 (169-273)||(38685188-38685292)
chr1 (169-273)||(11930779-11930876)
chr1 (1-98)||(23263809-23263906)
chr1 (177-259)||(23263698-23263780)
chr1 (2-72)||(37891722-37891792)
[»] chr6 (4 HSPs)
chr6 (1-110)||(17905903-17906012)
chr6 (1-81)||(8560345-8560425)
chr6 (169-273)||(17906021-17906125)
chr6 (170-273)||(8560855-8560958)
[»] chr3 (9 HSPs)
chr3 (1-110)||(2702015-2702124)
chr3 (1-110)||(14604193-14604302)
chr3 (169-273)||(2701902-2702006)
chr3 (169-273)||(14604080-14604184)
chr3 (1-71)||(53047338-53047408)
chr3 (3-98)||(21799747-21799842)
chr3 (17-72)||(29692953-29693008)
chr3 (17-72)||(29693367-29693422)
chr3 (11-72)||(29679427-29679488)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-110)||(71425-71534)
scaffold0059 (169-244)||(71543-71617)
[»] scaffold1155 (1 HSPs)
scaffold1155 (1-52)||(908-959)
[»] scaffold0345 (1 HSPs)
scaffold0345 (1-52)||(9258-9309)
[»] scaffold0105 (1 HSPs)
scaffold0105 (1-52)||(29671-29722)
[»] scaffold0296 (1 HSPs)
scaffold0296 (1-48)||(979-1026)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 45418697 - 45418969
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45418697 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggcgatatagatagc 45418796  T
Q  101 ctggatacaatttgcttcagatgagttagtgcgatgaattagaggtcaggaaatgaaaataatttcactcaccaacattacttctggaaatgaccctccc 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45418797 ctggatacaatttgcttcagatgaattagtgtgatgaattagaggttaggaaatgaaaataatttcactcaccaacattacttctagaaatgaccctccc 45418896  T
Q  201 ctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtatctata 273  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  45418897 ctcaatgacgtatcttcccatcctggtgataaccaatctggttccattgcataatccatatcgtgtatctata 45418969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11642549 - 11642658
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  11642549 ttgaattttgttaattgtcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaacctaaatggaatcctgacatctgaaggcgatatagatagc 11642648  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  11642649 ctggatacaa 11642658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 45286421 - 45286315
Alignment:
Q  4 acttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagcctg 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||    
T  45286421 acttttgttaattgtcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaacttaaagggaatccttacatctgaaggcgatatagataacatg 45286322  T
Q  104 gatacaa 110  Q
    |||||||    
T  45286321 gatacaa 45286315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 45286306 - 45286202
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  45286306 tcaccaacattagtttcggaaatgacccacccctcaatgacgtatcttcccatcctagtgataaccaatctggttccattgcataatccatatcgtgtat 45286207  T
Q  269 ctata 273  Q
    |||||    
T  45286206 ctata 45286202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9141416 - 9141524
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||    
T  9141416 ttgacttttgttaattatcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaacttaaaggaaatcctgacatctaaagg-catatagatagc 9141514  T
Q  101 ctggatacaa 110  Q
     |||||||||    
T  9141515 ttggatacaa 9141524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 16375863 - 16375972
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||  ||| ||||||     
T  16375863 ttgactttttttaattgtcattgcaaatgataaagtcaaaggaaattgtcttcgttgaaacttaaagggaatcctaacatctgaaggcaatagagataga 16375962  T
Q  101 ctggatacaa 110  Q
    ||||| ||||    
T  16375963 ctggaaacaa 16375972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 11642667 - 11642771
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||| |||||    
T  11642667 tcaccaacattattttcggaaatgaccctcccctcaatgacgtatcttcccaacttagtgataaccagtctggttccattgcataatccatatcgtgtat 11642766  T
Q  269 ctata 273  Q
    |||||    
T  11642767 ctata 11642771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 18415576 - 18415677
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||| ||||| |||||||||||||||||||||| ||||| ||||||| ||| |||||| ||||| || || || ||||| || ||||||| |||||||    
T  18415576 ttgactcttgttgattgtcattgcaaatgatacagccaaaggaaattgttttctttgaaatttaaaagggattctcacatcggagggtgatagagatagc 18415675  T
Q  101 ct 102  Q
    ||    
T  18415676 ct 18415677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44584565 - 44584518
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattg 48  Q
    ||||||||| ||||| |||||||||||||| |||||||||| ||||||    
T  44584565 ttgacttttattaatagtcattgcaaatgaaacagtcaaaggaaattg 44584518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 104640 - 104531
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  104640 ttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattgttttcgttgaaacttaaaggcaatcctgacatctgaaggtgatatagatagc 104541  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  104540 ctggatacaa 104531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 127289 - 127180
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| | |||||||||||||||||| ||||||||||||    
T  127289 ttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaatggtctttgttgaaacttaaatgcaatcctgacatctgaaggcgatatagatagc 127190  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  127189 ctggatacaa 127180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 104522 - 104418
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||| |||||    
T  104522 tcaccaacattactttaggaaatgactctcccctcaatgacgtatattcccatcctagtcataaccaatttggttccattgcataatccatatcgtgtat 104423  T
Q  269 ctata 273  Q
    |||||    
T  104422 ctata 104418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 127171 - 127067
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||| ||  ||||||||| |||||||||||||||||| |||||||| |||| ||||||| |||  ||||||||||||||||||||| |||||    
T  127171 tcaccaacattattttcggaaatgactctcccctcaatgacgtattttcccatcttagttataaccattctgtttccattgcataatccatatcgtgtat 127072  T
Q  269 ctata 273  Q
    |||||    
T  127071 ctata 127067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29968232 - 29968123
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  29968232 ttgacttttgttaattgtcattgcaaatgatacagtcaaagaaaattgtctttgttgaaacttaaagggaatcctgacatctgaaggcgatatagatagc 29968133  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  29968132 ctggatacaa 29968123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18000699 - 18000808
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18000699 ttgacttttcttaattgtcattgcaaatgatacagtcaaagagaattgtcttcgttaaaacttaaaggaaatcctgacatctgaaggtgatatagatagc 18000798  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  18000799 ctggatacaa 18000808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 41851412 - 41851516
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  41851412 tcaccaacattacttccggaaatgaccttcccctcaatgacgtatcttcccatcctagtgataaccaatctggttccattgcataatccatatcgtgtat 41851511  T
Q  269 ctata 273  Q
    |||||    
T  41851512 ctata 41851516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 41851297 - 41851403
Alignment:
Q  4 acttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagcctg 103  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  41851297 acttttgttaattatcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaacttaaagggaatcttgacatctgaaggcgatatagatagcctg 41851396  T
Q  104 gatacaa 110  Q
     ||||||    
T  41851397 aatacaa 41851403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 2479576 - 2479680
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  2479576 tcaccaacattacttctggaaatgaccttcccctcaatgacgcatcttcccatcctagtgataaccaatctgattccattgcataatccatatcgtgtat 2479675  T
Q  269 ctata 273  Q
    |||||    
T  2479676 ctata 2479680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 18000817 - 18000921
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  18000817 tcaccaacattacttctgaaaatgaccctcccctcaatgacctatcttcccatcctagtgataaccaatctgtttccattgcataatccatatcgtgtat 18000916  T
Q  269 ctata 273  Q
    |||||    
T  18000917 ctata 18000921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 29968114 - 29968010
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  29968114 tcaccaacattacttccggaaatgaccctcccctcaatgacgtatcttctcatcctagtgataaccaatctggttccattgcataattcatatcgtgtat 29968015  T
Q  269 ctata 273  Q
    |||||    
T  29968014 ctata 29968010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 2479462 - 2479559
Alignment:
Q  5 cttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagcct 102  Q
    ||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2479462 cttttgttaattgtcattgcaaatgatacaaccaaaggaaattttcttcgttgaaacttaaagggaatcctgacatctgaaggcgatatagatagcct 2479559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 50232194 - 50232295
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||| ||||| |||||||| ||||||||||||| ||||| ||||||| ||| |||||| ||||| || || || ||||| || ||||||| |||||||    
T  50232194 ttgactcttgttgattgtcatcgcaaatgatacagccaaaggaaattgttttctttgaaatttaaaagggattctcacatcggagggtgatagagatagc 50232293  T
Q  101 ct 102  Q
    ||    
T  50232294 ct 50232295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47428201 - 47428256
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgtt 56  Q
    ||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||    
T  47428201 ttgacttttgttaacggtcattgcaaatgatacagtcaaaagaaattgtcttcgtt 47428256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 56476035 - 56476132
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagata 98  Q
    ||||||||||||||| |||||||||||||| ||||  || |  | |||| |||||||||| ||||| |||||    ||||||||||| |||| |||||    
T  56476035 ttgacttttgttaatagtcattgcaaatgacacagctaacggtacttgttttcgttgaaatttaaaaggaattactacatctgaaggagatagagata 56476132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 10466687 - 10466643
Alignment:
Q  8 ttgttaattgtcattgcaaatgatacagtcaaagcaaattgtctt 52  Q
    |||||||||||||||| |||||||||| |||||| || |||||||    
T  10466687 ttgttaattgtcattgaaaatgatacaatcaaaggaacttgtctt 10466643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 1199509 - 1199402
Alignment:
Q  3 gacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagcct 102  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1199509 gacttttgttaattgtcattgcaaatgatatagtcaaaggaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggcgatatagatagcct 1199410  T
Q  103 ggatacaa 110  Q
    ||||||||    
T  1199409 ggatacaa 1199402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 1199393 - 1199289
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||  |||| |||||||||||||||||||||| |||||    
T  1199393 tcaccaaccttacttccggaaatgaccctcccctcaatgacgtatcttcccatcataatgataactgatctggttccattgcataatccatatcgtgtat 1199294  T
Q  269 ctata 273  Q
     ||||    
T  1199293 ttata 1199289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 30437355 - 30437459
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||| ||||||||||||| |||||    
T  30437355 tcaccaacattacttccataaatgaccctcccctcaataacgtatcttctcatcctagtgataaccaatatggttccattccataatccatatcgtgtat 30437454  T
Q  269 ctata 273  Q
    |||||    
T  30437455 ctata 30437459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 604291 - 604346
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgtt 56  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  604291 ttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattgtcttcgtt 604346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 30437280 - 30437346
Alignment:
Q  44 aattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagcctggatacaa 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||    
T  30437280 aattgtcttctttgaaacttaaagggaatcctgacatctgaaggcgatatagataaccttgatacaa 30437346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44430731 - 44430676
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgtt 56  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  44430731 ttgacttttgttaattttcattgcaaatgatacagtcaaaggaaattgtcttcgtt 44430676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44434295 - 44434240
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgtt 56  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  44434295 ttgacttttgttaattttcattgcaaatgatacagtcaaaggaaattgtcttcgtt 44434240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44429538 - 44429483
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgtt 56  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  44429538 ttgacttttgttaattttcattgcaaatgatacagtcaaaggaatttgtcttcgtt 44429483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 37589495 - 37589425
Alignment:
Q  2 tgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaat 72  Q
    ||||| |||||||| |||||||||||||| ||||  || | |||||||||||||| |||||| || |||||    
T  37589495 tgactcttgttaatagtcattgcaaatgagacagataacggaaattgtcttcgtttaaacttgaaaggaat 37589425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 14164750 - 14164854
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  14164750 tcaccaacattacttccggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatctggttccattgcataatccatatcgtgtat 14164849  T
Q  269 ctata 273  Q
    |||||    
T  14164850 ctata 14164854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19123164 - 19123055
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  19123164 ttgacttttgttaactgtcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaatttaaagggaatcctgacatctgaaggcgatatagagagc 19123065  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  19123064 ctggatacaa 19123055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 14164632 - 14164741
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||     
T  14164632 ttgacttttgttaattgtcattgcaaatgatacattcaaaggaaattgtcttcgttgaaacttaaagggaatccttacatttgaaggcgatatagatagt 14164731  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  14164732 ctggatacaa 14164741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31486414 - 31486523
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  31486414 ttgacttttgttaattgtcatttcaaatgatacagtcaaagaaaattatcttcgttgaaactttaagggaatactgacatctgaaggcgatatagatagc 31486513  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  31486514 ctggatacaa 31486523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7782191 - 7782082
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  7782191 ttgacttttgttaattatcattgcaaatgatacaatcaaaggaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggcgatagagataac 7782092  T
Q  101 ctggatacaa 110  Q
     |||||||||    
T  7782091 atggatacaa 7782082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 7782073 - 7781969
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |||||    
T  7782073 tcaccaacattactttcggaaataaccctctcctcaatgacgtatcttcccatcctagtgataactaatatggttccattgcataatccatatcgtgtat 7781974  T
Q  269 ctata 273  Q
    |||||    
T  7781973 ctata 7781969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 19123046 - 19122935
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtga-------taaccaatcttgttccattgcataatccatat 261  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||       |||||||||| |||| ||||||||||||||||    
T  19123046 tcaccaacattacttccgaaaatgaccctcccctcaatgacgtatcttcccatcctagtgataactgataaccaatctggttctattgcataatccatat 19122947  T
Q  262 catgtatctata 273  Q
    | ||||||||||    
T  19122946 cgtgtatctata 19122935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 21000936 - 21001037
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||| ||||| |||||||||||||||||||||| ||||| ||||||| ||| |||||| ||||| || || || ||||| || ||||||| |||||||    
T  21000936 ttgactcttgttgattgtcattgcaaatgatacaggcaaaggaaattgttttctttgaaatttaaaagggattctcacatcggagggtgatagagatagc 21001035  T
Q  101 ct 102  Q
    ||    
T  21001036 ct 21001037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20640227 - 20640336
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  20640227 ttgacttttcttaattgtcattgcaaatgatacagtcaaagagaattgtcttcgttaaaacttaaaggaaatcctgacatctgaaggtgatatagatagc 20640326  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  20640327 ctggatacaa 20640336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 20640345 - 20640449
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  20640345 tcaccaacattacttctgaaaatgaccctcccctcaatgacctatcttcccatcctagtgataaccaatctgtttccattgcataatccatatcgtgtat 20640444  T
Q  269 ctata 273  Q
    |||||    
T  20640445 ctata 20640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 38685410 - 38685301
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  38685410 ttgacttttgttgattgtcattgcaaatgatacagtcaaagaaaattatcttcgttgaaacttaaagggaatcatgacatctgaaggcgatatagatagc 38685311  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  38685310 ctggatacaa 38685301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 11930994 - 11930885
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  11930994 ttgacttttgttaattatcattgcaaatgatacaatcaaaggaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggcgatagagataac 11930895  T
Q  101 ctggatacaa 110  Q
     |||||||||    
T  11930894 atggatacaa 11930885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 23481081 - 23481190
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||||||||| | || |||||||    
T  23481081 ttgacttttgttaattgtcattgcaaatgatacaatcaaaggaatttgtcttcgttgaaacttaaaggggatcctgacatctgaaggcggtagagatagc 23481180  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  23481181 ctggatacaa 23481190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 23481199 - 23481303
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||| |||||    
T  23481199 tcaccaacattacttccggaaatgtccctcccctcaatgatgtatcttcccatcctagtgataactaatatagttccattgcataatccatatcgtgtat 23481298  T
Q  269 ctata 273  Q
    |||||    
T  23481299 ctata 23481303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5429278 - 5429192
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaagg 87  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  5429278 ttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaacttaaagggaattctaacatctgaagg 5429192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 38685292 - 38685188
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||||| ||||||| |||||    
T  38685292 tcaccaacattacatccggaaatgaccctcccctcaatgacatatcttctcatcctagtgataactaatctgattccattgcataacccatatcgtgtat 38685193  T
Q  269 ctata 273  Q
    |||||    
T  38685192 ctata 38685188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 11930876 - 11930779
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||| |||||| |||||| ||||||||||       ||||||||||| ||||| ||||| |||||||||||||||||||||| |||||    
T  11930876 tcaccaacattacttccggaaataaccctctcctcaatgac-------cccatcctagtaataactaatctggttccattgcataatccatatcgtgtat 11930784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 23263906 - 23263809
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagata 98  Q
    ||||||||||||||| |||||||||||||| ||||  ||||  | |||| |||||||||| ||||| |||||   |||||||||||| |||| |||||    
T  23263906 ttgacttttgttaatagtcattgcaaatgacacagctaaaggtacttgttttcgttgaaatttaaaaggaattacgacatctgaaggagatagagata 23263809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 23263780 - 23263698
Alignment:
Q  177 attacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccat 259  Q
    ||||||||  ||||| ||| ||||||| || |||||||||||||| ||||| |||| |||||| |||   |||||||||||||    
T  23263780 attacttccagaaattaccttcccctcgattacgtatcttcccattctagtaataatcaatctggttatgttgcataatccat 23263698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 37891722 - 37891792
Alignment:
Q  2 tgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaat 72  Q
    ||||| |||||||| |||||||||||||| |||| ||| | ||| |||||||||| |||||| || |||||    
T  37891722 tgactcttgttaatagtcattgcaaatgagacagacaacggaaactgtcttcgtttaaacttgaacggaat 37891792  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17905903 - 17906012
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  17905903 ttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattgtcgtagttgaaacttaaagggaatcctgacatctgaaggcgatatagttagc 17906002  T
Q  101 ctggatacaa 110  Q
     |||||||||    
T  17906003 atggatacaa 17906012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8560345 - 8560425
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatc 81  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8560345 ttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaacttaaagggaatcctgacatc 8560425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 17906021 - 17906125
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||  ||||    
T  17906021 tcaccaacattacttccggaaatgaccctcccctaaatgacgtatattcccatcctagtgataaccaatctggttccattgcatattccatatcgggtat 17906120  T
Q  269 ctata 273  Q
    |||||    
T  17906121 ctata 17906125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 8560855 - 8560958
Alignment:
Q  170 caccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtatc 269  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| || |||    
T  8560855 caccaacattacttctggaaataaccctctcctcaatgacgtatcttcccatcctagtgataactaatttggttccattgcataatccatatcgtggatc 8560954  T
Q  270 tata 273  Q
    ||||    
T  8560955 tata 8560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2702124 - 2702015
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||    
T  2702124 ttgacttttgataattgtcattgcaaatgatacagtcaaaggaaattgtctttgtcgaaacttaaagggaatcatgacatctgaaggcgatatagatagc 2702025  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  2702024 ctggatacaa 2702015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14604302 - 14604193
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||    
T  14604302 ttgacttttattaattgtcattgcaaatgatacagtcaaaggaaattgttttcattgaaacttaaagggaatcctgacatctaaaggcgatatagatagc 14604203  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  14604202 ctggatacaa 14604193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 2702006 - 2701902
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    |||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||    
T  2702006 tcaccaacattactttcgaaaatgaccctcccctcaatgatgtatcttcccatcctagtgataaacaatttggttccattgcataatccatatcgtgtat 2701907  T
Q  269 ctata 273  Q
    |||||    
T  2701906 ctata 2701902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 14604184 - 14604080
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttccattgcataatccatatcatgtat 268  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||| |||||||||||||||| |||||    
T  14604184 tcaccaacattacttttgtaaatgaccctcccctcaatggcgtatcttcccatcttagtgataaccaatttggttcctttgcataatccatatcgtgtat 14604085  T
Q  269 ctata 273  Q
    |||||    
T  14604084 ctata 14604080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 53047338 - 53047408
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaa 71  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  53047338 ttgacttttgttaattgtcgttgcaaatgatacagtccaaggaaattgtcttcgttgaaacttaaaaggaa 53047408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 21799842 - 21799747
Alignment:
Q  3 gacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagata 98  Q
    |||| ||||| ||||||||||||||| |||||| ||||| ||||||| ||| |||||| ||||| || || || ||||| || ||||||| |||||    
T  21799842 gactcttgttgattgtcattgcaaatcatacagccaaagaaaattgttttctttgaaatttaaaagggattctcacatcggagggtgatagagata 21799747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 29692953 - 29693008
Alignment:
Q  17 gtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaat 72  Q
    |||||||||||||| |||  ||||| ||||||||||||||||||||| || |||||    
T  29692953 gtcattgcaaatgagacaaccaaaggaaattgtcttcgttgaaacttgaaaggaat 29693008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 29693367 - 29693422
Alignment:
Q  17 gtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaat 72  Q
    |||||||||||||| |||  ||||| ||||||||||||||||||||| || |||||    
T  29693367 gtcattgcaaatgagacaaccaaaggaaattgtcttcgttgaaacttgaaaggaat 29693422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 29679427 - 29679488
Alignment:
Q  11 ttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaat 72  Q
    ||||| |||||||||||||| |||  ||||| ||||| ||||||||||||||| || |||||    
T  29679427 ttaatagtcattgcaaatgagacaaccaaaggaaattttcttcgttgaaacttgaaaggaat 29679488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 71425 - 71534
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtcttcgttgaaacttaaagggaatcctgacatctgaaggtgatatagatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||| | |||||| ||||||||||| ||||||||||||    
T  71425 ttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaatagtcttagttgaaaattaaaagcaatcctaacatctgaaggcgatatagatagc 71524  T
Q  101 ctggatacaa 110  Q
    ||||||||||    
T  71525 ctggatacaa 71534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 71543 - 71617
Alignment:
Q  169 tcaccaacattacttctggaaatgaccctcccctcaatgacgtatcttcccatcctagtgataaccaatcttgttc 244  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||  | |||||||||| ||| ||||||| ||||    
T  71543 tcaccaacattacttccggaaatgactctcccctcaatgacgtat-ataccatcctagtcatatccaatctggttc 71617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 908 - 959
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtctt 52  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  908 ttgactttttttaattgtcattgcaaatgatacagtcaaaggaaattgtctt 959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9309 - 9258
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtctt 52  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  9309 ttgactttttttaattgtcattgcaaatgatacagtcaaaggaaattgtctt 9258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29671 - 29722
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattgtctt 52  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  29671 ttgactttttttaattgtcattgcaaatgatacagtcaaaggaaattgtctt 29722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0296 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0296
Description:

Target: scaffold0296; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 979 - 1026
Alignment:
Q  1 ttgacttttgttaattgtcattgcaaatgatacagtcaaagcaaattg 48  Q
    ||||||||| ||||| |||||||||||||| |||||||||| ||||||    
T  979 ttgacttttattaatagtcattgcaaatgaaacagtcaaaggaaattg 1026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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