View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7790_low_22 (Length: 266)
Name: NF7790_low_22
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 6083499 - 6083267
Alignment:
| Q |
19 |
aaattggacttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083499 |
aaattggacttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatc |
6083400 |
T |
|
| Q |
119 |
aatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaattttcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083399 |
aatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaattttcaa |
6083300 |
T |
|
| Q |
219 |
tcacagttttagcaagccttttacttttctctg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6083299 |
tcacagttttagcaagccttttacttttctctg |
6083267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 39107915 - 39108062
Alignment:
| Q |
27 |
cttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatcaatgcatt |
126 |
Q |
| |
|
|||||||||| || || || ||||||| ||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||| || ||||| |||| | |
|
|
| T |
39107915 |
cttcatttcggatctccagctccttttcaagtactcggacctcatatgtcagagaagcattatctttctcagtggactctaatctaaccatcagtgcact |
39108014 |
T |
|
| Q |
127 |
acgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaa |
174 |
Q |
| |
|
| |||| | || |||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
39108015 |
atgatctgcctcagcttgagtcaattgtcttttcagatcctcaatcaa |
39108062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University