View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7790_low_25 (Length: 252)
Name: NF7790_low_25
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 29318823 - 29318604
Alignment:
| Q |
18 |
ttctcagtcattgagttgtttctattttgccattctttatgctactggaattgtgaatgagtttggacctgaaagtaatggtggcgttacttgtgctttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
29318823 |
ttctcagtcattgagttgtttctattttgtcattctttatgctactggaattgtgaatgagtttggacctgaaagtaatggtggtgtttcttgtgctttt |
29318724 |
T |
|
| Q |
118 |
agtttacctgtttcacaagttggttctggttctgtaaatattatattaaggaagcatattatttttaggactggtgatgtggaatttgaattggattgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29318723 |
agtttacctgtttcacaagttggttctggttctgtaaatattatattaaggaagcatattatttttaggactggtgatgtggaatttgaattggattgca |
29318624 |
T |
|
| Q |
218 |
gctatttttaatgtagtaat |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29318623 |
gctatttttaatgtagtaat |
29318604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 717661 - 717796
Alignment:
| Q |
17 |
attctcagtcattgagttgtttctattttgccattctttatgctactggaattgtgaatgagtttggacctgaaagtaatggtggcgttacttgtgcttt |
116 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
717661 |
attctcagtctttgagttgtttctactttgcaattctttatgctgctggaattgttaatgagtttggacctgaaagtaatggtgctgttacttgtgcttt |
717760 |
T |
|
| Q |
117 |
tagtttacctgt---ttcacaagttggttctggttc |
149 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
717761 |
tagtttacctgtttattcacaagttggttctggttc |
717796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 26942217 - 26942270
Alignment:
| Q |
23 |
agtcattgagttgtttctattttgccattctttatgctactggaattgtgaatga |
77 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
26942217 |
agtcattgagttgtt-ctattttgcaattctttatgctgctggaattgtgaatga |
26942270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University