View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7790_low_26 (Length: 237)

Name: NF7790_low_26
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7790_low_26
NF7790_low_26
[»] chr5 (3 HSPs)
chr5 (9-223)||(32076643-32076855)
chr5 (90-137)||(19100302-19100349)
chr5 (90-138)||(31114266-31114314)
[»] chr4 (2 HSPs)
chr4 (43-141)||(38948695-38948793)
chr4 (24-126)||(2295181-2295283)
[»] scaffold0565 (1 HSPs)
scaffold0565 (24-125)||(7710-7811)
[»] chr3 (2 HSPs)
chr3 (90-137)||(43471583-43471630)
chr3 (90-126)||(46979622-46979658)
[»] chr8 (4 HSPs)
chr8 (45-139)||(24728765-24728859)
chr8 (24-137)||(9409727-9409840)
chr8 (28-137)||(11755886-11755995)
chr8 (24-136)||(11789588-11789700)
[»] chr6 (1 HSPs)
chr6 (24-125)||(12283908-12284009)
[»] chr1 (4 HSPs)
chr1 (24-125)||(11767860-11767961)
chr1 (91-124)||(50709376-50709409)
chr1 (24-124)||(17116056-17116156)
chr1 (24-60)||(50727122-50727158)
[»] chr7 (2 HSPs)
chr7 (87-137)||(25311338-25311388)
chr7 (90-126)||(24699660-24699696)
[»] chr2 (3 HSPs)
chr2 (41-99)||(11562952-11563010)
chr2 (24-125)||(38221828-38221929)
chr2 (90-126)||(21812172-21812208)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 32076643 - 32076855
Alignment:
Q  9 cccttcatcttttctataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgt 108  Q
    ||||||||||||||||  ||||||| ||| |||| |||| ||||||||||||| |||||||||| ||| ||||||||||| |||||||||||  ||||||    
T  32076643 cccttcatcttttcta--attaattctgatattttgtgggtacgtatccgcgaatatccttaaagtatcggtatccgttacgtatccgatacatatatgt 32076740  T
Q  109 ctccattttggagtatccaggtttcataggttcacacaaatcttgttgaacaaatatctaatattatgagccttaaagattgccggaatattggatttgg 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32076741 ctccattttggagtatcgaggtttcataggttcacacaaatcttgttcaacaaatatctaatattatgagccttaaagattgccggaatattggatttgg 32076840  T
Q  209 ttacctggatatttc 223  Q
    |||||||||||||||    
T  32076841 ttacctggatatttc 32076855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 19100302 - 19100349
Alignment:
Q  90 gtatccgatacggatatgtctccattttggagtatccaggtttcatag 137  Q
    ||||||||||||| || ||||||||||||||||||||||| |||||||    
T  19100302 gtatccgatacgggtacgtctccattttggagtatccaggcttcatag 19100349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 31114266 - 31114314
Alignment:
Q  90 gtatccgatacggatatgtctccattttggagtatccaggtttcatagg 138  Q
    ||||||||||||| ||||||||  ||||||||||||| || ||||||||    
T  31114266 gtatccgatacgggtatgtctcagttttggagtatccgggcttcatagg 31114314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 38948695 - 38948793
Alignment:
Q  43 cgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagtatccaggtttcataggttc 141  Q
    |||||||| ||||||| || ||||| |  | ||| |||||||| || |||||| ||||||||| ||||||||||||||||||||| | |||||||||||    
T  38948695 cgtggatatgtatccgagagtatccgtggagtatcggtatccgatacgtatccaatacggatacgtctccattttggagtatccaagcttcataggttc 38948793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 2295283 - 2295181
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    ||||||||||  || | ||||||||||||||||||||| |||||||  | ||| ||||||||  | ||||||| ||||| || |||||  |||| |||||    
T  2295283 ataattaattccgatacttcgtggatacgtatccgcgagtatccttggagtatcggtatccgacacgtatccggtacgggtacgtctctgtttttgagta 2295184  T
Q  124 tcc 126  Q
    |||    
T  2295183 tcc 2295181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 7811 - 7710
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    ||||||||||  || | ||||||||||||||||||||| ||||| || | ||| |||||| | || |||||||||||||||| |||||| ||||| ||||    
T  7811 ataattaattccgatacttcgtggatacgtatccgcgagtatccgtagagtatcggtatctgatacgtatccgatacggatacgtctccgttttgaagta 7712  T
Q  124 tc 125  Q
    ||    
T  7711 tc 7710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 43471630 - 43471583
Alignment:
Q  90 gtatccgatacggatatgtctccattttggagtatccaggtttcatag 137  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||    
T  43471630 gtatccgatacggatatgtctccattttggagtatccgggattcatag 43471583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 46979622 - 46979658
Alignment:
Q  90 gtatccgatacggatatgtctccattttggagtatcc 126  Q
    ||||||||||||| || ||||||||||||||||||||    
T  46979622 gtatccgatacgggtacgtctccattttggagtatcc 46979658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 24728765 - 24728859
Alignment:
Q  45 tggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagtatccaggtttcataggt 139  Q
    ||||||||||||||||| ||||| |  | |||||||||| | || ||||||||||||  || |||||| ||||||||||||| || |||||||||    
T  24728765 tggatacgtatccgcgagtatccgtggagtattggtatctgatacgtatccgatacgagtacgtctccgttttggagtatccgggcttcataggt 24728859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 9409840 - 9409727
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    |||||||||||||| | |||||||||||||||||| || ||||| |  | ||| |||||||| || |||| || ||||| || |||||  ||||||| ||    
T  9409840 ataattaattatgatacttcgtggatacgtatccgtgagtatccgtggagtatcggtatccgatacgtattcggtacgggtacgtctctgttttggaata 9409741  T
Q  124 tccaggtttcatag 137  Q
    ||| || |||||||    
T  9409740 tccgggcttcatag 9409727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 11755886 - 11755995
Alignment:
Q  28 ttaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagtatcca 127  Q
    |||||||| | | |||||| ||||||||||  || ||||| |||| |||  ||||||  ||| ||||| |||||||||||||||| ||||| |||||||     
T  11755886 ttaattataatacttcgtgaatacgtatccaagagtatccgtaaagtatcagtatccaatatatatccaatacggatatgtctccgttttgaagtatccg 11755985  T
Q  128 ggtttcatag 137  Q
    | ||||||||    
T  11755986 gatttcatag 11755995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 11789588 - 11789700
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    |||||||||| ||| | ||||||||||||||||||||| ||||| |  | ||| |||||| | || ||||| | |||||  | |||||| ||||||||||    
T  11789588 ataattaattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatctgatacgtatctggtacgggcacgtctccgttttggagta 11789687  T
Q  124 tccaggtttcata 136  Q
    ||| || ||||||    
T  11789688 tccgggcttcata 11789700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 12283908 - 12284009
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    |||||||||| ||| | ||||||| ||| ||||||| | ||||| |  | ||| |||||||| || |||||||||||||||| |||| ||||||||||||    
T  12283908 ataattaattttgatacttcgtgggtacatatccgcaaatatccgtggagtatcggtatccgatacgtatccgatacggatacgtcttcattttggagta 12284007  T
Q  124 tc 125  Q
    ||    
T  12284008 tc 12284009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 11767860 - 11767961
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    |||||||||| ||| | ||||||| | ||||||||||| ||||| |||| ||| |||||||| || |||||| |||||| || |||||| |||| |||||    
T  11767860 ataattaattttgatacttcgtgggtgcgtatccgcgagtatccgtaaagtatcggtatccgatacgtatccaatacgggtacgtctccgttttagagta 11767959  T
Q  124 tc 125  Q
    ||    
T  11767960 tc 11767961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 50709409 - 50709376
Alignment:
Q  91 tatccgatacggatatgtctccattttggagtat 124  Q
    ||||||||||||||| ||||||||||||||||||    
T  50709409 tatccgatacggatacgtctccattttggagtat 50709376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 17116156 - 17116056
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    ||||||||||  || | |||||||||||||| |||||| ||||| | || ||| |||||||| || ||||| | ||||  || |||||| ||||||||||    
T  17116156 ataattaattccgatacttcgtggatacgtacccgcgagtatccgtgaagtatcggtatccgatacgtatctggtacgtgtacgtctccgttttggagta 17116057  T
Q  124 t 124  Q
    |    
T  17116056 t 17116056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 50727158 - 50727122
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcg 60  Q
    |||||||||||||| | ||||||||||||||||||||    
T  50727158 ataattaattatgatacttcgtggatacgtatccgcg 50727122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 25311338 - 25311388
Alignment:
Q  87 tatgtatccgatacggatatgtctccattttggagtatccaggtttcatag 137  Q
    |||||||||||||||| || |||||| |||||||||||||||| |||||||    
T  25311338 tatgtatccgatacgggtacgtctccgttttggagtatccaggcttcatag 25311388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 24699696 - 24699660
Alignment:
Q  90 gtatccgatacggatatgtctccattttggagtatcc 126  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  24699696 gtatccgatacagatacgtctccattttggagtatcc 24699660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 11562952 - 11563010
Alignment:
Q  41 ttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgata 99  Q
    ||||||||||||||||||||| ||||| | || ||| |||||| | |||||||||||||    
T  11562952 ttcgtggatacgtatccgcgagtatccgtgaagtatcggtatctgatatgtatccgata 11563010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 38221828 - 38221929
Alignment:
Q  24 ataattaattatgaaatttcgtggatacgtatccgcgactatccttaaattattggtatccgttatgtatccgatacggatatgtctccattttggagta 123  Q
    ||||||||||  || | ||||||| | ||||||||||| ||||| |  | ||| |||||||  || ||||||||||||| || |||||| ||||||||||    
T  38221828 ataattaattccgatacttcgtgggtgcgtatccgcgagtatccgtggagtatcggtatccaatacgtatccgatacgggtacgtctccgttttggagta 38221927  T
Q  124 tc 125  Q
    ||    
T  38221928 tc 38221929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 21812208 - 21812172
Alignment:
Q  90 gtatccgatacggatatgtctccattttggagtatcc 126  Q
    |||||||||||||||||||||  ||||||||||||||    
T  21812208 gtatccgatacggatatgtctttattttggagtatcc 21812172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University