View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_4 (Length: 480)
Name: NF7790_low_4
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 21 - 465
Target Start/End: Complemental strand, 42780784 - 42780337
Alignment:
| Q |
21 |
caacgaaagtcaacagttgaaaattttaccaagttcaagtaaggatgttatgttattgttaccttaacgccgaggatagaaggagtggctataactgaag |
120 |
Q |
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| T |
42780784 |
caacgaaagtcaacagttgaaaatgttaccaagttcaagtaaggatgttatgttattgttaccttaacgccgaggatagaaggagtggctgtaagtgaag |
42780685 |
T |
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| Q |
121 |
cattactgtgaagtgacacaatggttttgtgaatggcgattttggagagtggttgttcaccaaatccattagcatgagcagaacacaaaacgatgtttga |
220 |
Q |
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| T |
42780684 |
cattactgtgaagtgacacaatggttttgtgaatggcgattttggagagtggttgttcaccaaatccattagcatgagcagaacacaaaacgatgtttga |
42780585 |
T |
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| Q |
221 |
gttgagcaacaaccatgctaaggttgctactagaataatcatgttgtgcctgtgccttatgctctcttgtttcatttcgttgaactcaagagaggttggt |
320 |
Q |
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| T |
42780584 |
gttgagtaacaaccatgctaaggttgctactagaataatcatgttgtgcctgtgccttatgctctcttgtttcatttcgttgaactcaagagaggttagt |
42780485 |
T |
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| Q |
321 |
ttggttgggatcgaattaatatgtgagttaaaagatgcctataattatgtagtatattccacttcgactt---tcttactatgattgtttctgtgttgtg |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42780484 |
ttggctgggatcgaattaatatgtgagttaaaagatgcctataattatatagtatattccacttcgactttcttcttactatgattgtttctgtgttgtg |
42780385 |
T |
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| Q |
418 |
aaactcaaaataatcaattattacgacttacgatttgatgaagaaact |
465 |
Q |
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| T |
42780384 |
aaactcaaaataatcaattattacgacttacgatttgatgaagaaact |
42780337 |
T |
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