View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7790_low_5 (Length: 459)

Name: NF7790_low_5
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7790_low_5
NF7790_low_5
[»] chr7 (42 HSPs)
chr7 (224-442)||(45418199-45418416)
chr7 (4-169)||(45418471-45418636)
chr7 (4-138)||(11642356-11642488)
chr7 (4-138)||(45286485-45286621)
chr7 (1-138)||(16375670-16375805)
chr7 (256-349)||(32277644-32277737)
chr7 (256-344)||(6250453-6250540)
chr7 (257-345)||(30991680-30991768)
chr7 (7-136)||(9141225-9141352)
chr7 (256-335)||(48639025-48639104)
chr7 (256-345)||(40449362-40449451)
chr7 (224-342)||(2354042-2354159)
chr7 (256-344)||(11650188-11650276)
chr7 (256-344)||(34838260-34838348)
chr7 (256-345)||(9140987-9141076)
chr7 (256-345)||(16673909-16673998)
chr7 (256-345)||(17648277-17648366)
chr7 (256-344)||(4681238-4681326)
chr7 (256-344)||(22773518-22773606)
chr7 (224-345)||(12140467-12140587)
chr7 (267-344)||(2852827-2852904)
chr7 (256-344)||(1565949-1566037)
chr7 (256-344)||(9396365-9396453)
chr7 (256-344)||(22325022-22325110)
chr7 (256-344)||(40409172-40409259)
chr7 (256-344)||(22967762-22967850)
chr7 (260-339)||(18487929-18488008)
chr7 (267-345)||(4680511-4680589)
chr7 (265-343)||(27711937-27712015)
chr7 (56-138)||(22967971-22968055)
chr7 (224-342)||(35125481-35125599)
chr7 (267-342)||(16362175-16362250)
chr7 (256-344)||(21128801-21128889)
chr7 (256-314)||(5553592-5553650)
chr7 (256-314)||(16375465-16375523)
chr7 (266-344)||(24787354-24787432)
chr7 (256-344)||(16491612-16491700)
chr7 (256-345)||(21225062-21225151)
chr7 (10-100)||(48639471-48639556)
chr7 (260-314)||(40686185-40686239)
chr7 (307-344)||(2527059-2527096)
chr7 (281-346)||(23591179-23591244)
[»] chr4 (38 HSPs)
chr4 (1-136)||(29968285-29968418)
chr4 (256-345)||(52688586-52688675)
chr4 (224-342)||(8478514-8478631)
chr4 (256-344)||(28379293-28379381)
chr4 (224-345)||(47427773-47427894)
chr4 (4-138)||(47428008-47428140)
chr4 (257-339)||(44500935-44501017)
chr4 (4-138)||(41851100-41851232)
chr4 (259-344)||(18000251-18000336)
chr4 (267-344)||(47769368-47769445)
chr4 (256-346)||(53143009-53143101)
chr4 (256-344)||(2479030-2479118)
chr4 (4-138)||(2479265-2479397)
chr4 (256-344)||(8119284-8119372)
chr4 (256-344)||(28813905-28813993)
chr4 (267-342)||(12795493-12795568)
chr4 (270-345)||(48076778-48076853)
chr4 (256-337)||(2177820-2177901)
chr4 (4-138)||(18000511-18000638)
chr4 (48-138)||(24050701-24050793)
chr4 (267-343)||(23952123-23952199)
chr4 (270-342)||(32010482-32010554)
chr4 (256-344)||(36639755-36639843)
chr4 (256-344)||(54652880-54652968)
chr4 (256-338)||(22293671-22293753)
chr4 (256-342)||(29968566-29968652)
chr4 (265-345)||(8396881-8396962)
chr4 (267-328)||(21580846-21580907)
chr4 (4-137)||(10466746-10466877)
chr4 (278-345)||(15465002-15465069)
chr4 (260-326)||(4942387-4942453)
chr4 (280-338)||(7822324-7822382)
chr4 (267-345)||(37325309-37325387)
chr4 (256-310)||(52688741-52688795)
chr4 (256-333)||(24050939-24051016)
chr4 (256-345)||(41850864-41850953)
chr4 (256-344)||(14989344-14989432)
chr4 (256-344)||(7812818-7812902)
[»] scaffold0013 (4 HSPs)
scaffold0013 (4-138)||(104701-104833)
scaffold0013 (4-138)||(127350-127482)
scaffold0013 (260-344)||(104984-105068)
scaffold0013 (260-344)||(127634-127718)
[»] chr5 (24 HSPs)
chr5 (4-138)||(19123225-19123357)
chr5 (4-138)||(14164439-14164571)
chr5 (256-344)||(19123501-19123589)
chr5 (256-346)||(41511683-41511773)
chr5 (256-345)||(12441615-12441704)
chr5 (4-138)||(31486221-31486353)
chr5 (4-138)||(31487237-31487368)
chr5 (256-342)||(10409926-10410012)
chr5 (48-138)||(23141145-23141237)
chr5 (224-344)||(23141338-23141460)
chr5 (256-342)||(38110586-38110672)
chr5 (256-344)||(41092266-41092354)
chr5 (256-347)||(9487327-9487417)
chr5 (266-344)||(7129214-7129292)
chr5 (256-349)||(16306105-16306198)
chr5 (270-350)||(16538208-16538288)
chr5 (256-344)||(43394564-43394652)
chr5 (267-346)||(26522705-26522784)
chr5 (256-342)||(14164205-14164291)
chr5 (256-342)||(19322769-19322855)
chr5 (267-344)||(7672742-7672819)
chr5 (260-337)||(20563309-20563386)
chr5 (256-350)||(16529355-16529449)
chr5 (267-332)||(38004044-38004109)
[»] chr1 (36 HSPs)
chr1 (224-344)||(5429625-5429745)
chr1 (4-138)||(38685471-38685603)
chr1 (256-344)||(21618810-21618898)
chr1 (260-342)||(39282406-39282488)
chr1 (4-138)||(23480888-23481020)
chr1 (256-344)||(12116075-12116163)
chr1 (256-345)||(16165187-16165276)
chr1 (256-344)||(25931332-25931420)
chr1 (256-344)||(28949505-28949593)
chr1 (257-344)||(6537105-6537192)
chr1 (260-347)||(52407475-52407562)
chr1 (256-342)||(18913118-18913204)
chr1 (256-342)||(27296724-27296810)
chr1 (258-344)||(48411581-48411667)
chr1 (256-344)||(1648266-1648354)
chr1 (256-344)||(4099890-4099978)
chr1 (260-344)||(47791420-47791504)
chr1 (260-346)||(44451662-44451748)
chr1 (256-342)||(3226481-3226567)
chr1 (15-120)||(5429385-5429488)
chr1 (264-355)||(52741032-52741123)
chr1 (256-342)||(44264524-44264610)
chr1 (267-343)||(319021-319096)
chr1 (256-344)||(21882778-21882866)
chr1 (256-310)||(21618690-21618744)
chr1 (256-342)||(45416854-45416940)
chr1 (56-138)||(21882573-21882657)
chr1 (267-342)||(1155675-1155750)
chr1 (256-347)||(24595619-24595710)
chr1 (270-333)||(51114323-51114386)
chr1 (224-314)||(38685717-38685807)
chr1 (256-313)||(44099254-44099311)
chr1 (267-347)||(42491588-42491669)
chr1 (279-330)||(51271761-51271812)
chr1 (270-344)||(46533409-46533483)
chr1 (256-314)||(23480687-23480745)
[»] scaffold0059 (2 HSPs)
scaffold0059 (4-138)||(71232-71364)
scaffold0059 (260-344)||(70580-70664)
[»] chr6 (16 HSPs)
chr6 (4-138)||(1394083-1394215)
chr6 (256-344)||(29202796-29202884)
chr6 (225-344)||(1394331-1394450)
chr6 (260-342)||(17905478-17905560)
chr6 (224-344)||(25068563-25068682)
chr6 (256-342)||(34294603-34294689)
chr6 (256-345)||(9829322-9829411)
chr6 (256-349)||(17203574-17203667)
chr6 (256-345)||(4099552-4099641)
chr6 (4-138)||(17905710-17905842)
chr6 (267-345)||(4810678-4810756)
chr6 (266-344)||(23622963-23623041)
chr6 (296-344)||(6036586-6036634)
chr6 (294-344)||(23902752-23902802)
chr6 (256-321)||(26831802-26831867)
chr6 (256-301)||(32207949-32207994)
[»] chr3 (25 HSPs)
chr3 (5-135)||(53047148-53047276)
chr3 (256-347)||(47501152-47501243)
chr3 (260-345)||(51654740-51654825)
chr3 (4-138)||(17757725-17757857)
chr3 (4-138)||(19059045-19059177)
chr3 (256-342)||(20876491-20876577)
chr3 (259-344)||(10267379-10267464)
chr3 (256-344)||(860684-860772)
chr3 (256-344)||(37760883-37760971)
chr3 (270-345)||(11454797-11454872)
chr3 (4-136)||(2702188-2702318)
chr3 (256-344)||(38886834-38886922)
chr3 (267-345)||(23777260-23777338)
chr3 (270-344)||(24365967-24366041)
chr3 (265-344)||(11523322-11523401)
chr3 (256-345)||(836815-836904)
chr3 (267-346)||(36642736-36642815)
chr3 (279-342)||(2730927-2730990)
chr3 (256-329)||(53046926-53046999)
chr3 (257-345)||(45514223-45514311)
chr3 (256-301)||(17758006-17758051)
chr3 (256-301)||(19059326-19059371)
chr3 (224-342)||(2702434-2702548)
chr3 (267-314)||(46452593-46452640)
chr3 (259-335)||(25916700-25916776)
[»] chr2 (27 HSPs)
chr2 (256-345)||(41327158-41327247)
chr2 (256-357)||(833267-833368)
chr2 (256-345)||(37130758-37130847)
chr2 (260-344)||(2131972-2132056)
chr2 (256-348)||(10128778-10128870)
chr2 (260-344)||(14335827-14335911)
chr2 (256-342)||(11658241-11658327)
chr2 (268-344)||(11736862-11736938)
chr2 (256-344)||(44543360-44543448)
chr2 (256-354)||(12898637-12898735)
chr2 (259-344)||(20639779-20639864)
chr2 (260-344)||(17370674-17370758)
chr2 (256-342)||(12896042-12896128)
chr2 (4-138)||(20640039-20640166)
chr2 (260-344)||(28611522-28611606)
chr2 (256-342)||(8430566-8430651)
chr2 (261-345)||(44257056-44257140)
chr2 (267-336)||(627994-628063)
chr2 (256-345)||(29550732-29550821)
chr2 (256-344)||(27351507-27351595)
chr2 (267-345)||(6348486-6348564)
chr2 (260-344)||(20709601-20709685)
chr2 (256-314)||(11131741-11131799)
chr2 (257-345)||(19640521-19640609)
chr2 (257-345)||(19839114-19839202)
chr2 (256-314)||(30556867-30556925)
chr2 (259-342)||(41995020-41995104)
[»] chr8 (29 HSPs)
chr8 (4-138)||(1199572-1199704)
chr8 (4-138)||(604098-604230)
chr8 (256-342)||(30206524-30206610)
chr8 (4-138)||(1852247-1852379)
chr8 (4-138)||(30437075-30437207)
chr8 (256-346)||(9389501-9389591)
chr8 (256-344)||(30436840-30436929)
chr8 (1-138)||(44429596-44429730)
chr8 (4-138)||(44434356-44434487)
chr8 (256-344)||(14683410-14683498)
chr8 (267-338)||(42046075-42046146)
chr8 (256-337)||(35618020-35618101)
chr8 (260-344)||(23086384-23086468)
chr8 (267-343)||(39921841-39921917)
chr8 (224-344)||(32063187-32063305)
chr8 (259-344)||(23959900-23959985)
chr8 (259-344)||(38111714-38111799)
chr8 (256-340)||(37197296-37197380)
chr8 (269-344)||(3990820-3990895)
chr8 (265-344)||(34948252-34948331)
chr8 (268-344)||(27852982-27853058)
chr8 (13-138)||(1851110-1851233)
chr8 (256-342)||(1199849-1199935)
chr8 (224-330)||(603876-603982)
chr8 (256-314)||(44434608-44434666)
chr8 (297-340)||(34588435-34588478)
chr8 (1-105)||(44433332-44433430)
chr8 (256-296)||(13461328-13461368)
chr8 (256-300)||(3458793-3458837)
[»] scaffold1155 (1 HSPs)
scaffold1155 (1-136)||(716-849)
[»] scaffold0345 (1 HSPs)
scaffold0345 (1-136)||(9368-9501)
[»] scaffold0105 (1 HSPs)
scaffold0105 (1-136)||(29479-29612)
[»] scaffold0018 (1 HSPs)
scaffold0018 (267-344)||(163384-163461)
[»] scaffold0294 (1 HSPs)
scaffold0294 (259-339)||(12134-12214)
[»] scaffold0504 (1 HSPs)
scaffold0504 (270-352)||(1324-1407)
[»] scaffold0240 (1 HSPs)
scaffold0240 (267-342)||(13672-13747)
[»] scaffold0097 (1 HSPs)
scaffold0097 (260-344)||(13440-13524)
[»] scaffold0090 (1 HSPs)
scaffold0090 (260-314)||(12000-12054)
[»] scaffold0167 (1 HSPs)
scaffold0167 (267-340)||(16594-16666)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 224 - 442
Target Start/End: Complemental strand, 45418416 - 45418199
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||| |||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||    
T  45418416 gtctactatggattatcacatgttatttttt-caccgttatcaattatatattgcattttattatttgtatgtcaatccctttacaataaaactgagtgg 45418318  T
Q  324 agcacgggtcaaaaatctagtaaattcttaattgtattatgcatattattgaaaatgaaatgatatagttatcttcctgtcaaatatacaaaaaataata 423  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  45418317 agcacgggtcaaaaatctagcaagttcttaactgtattatgcatattattgacaatgaaatgacatagttatcttcctgtcaaatatacaaaaaataata 45418218  T
Q  424 attacactatgcgagacat 442  Q
    |||||||| ||||||||||    
T  45418217 attacactgtgcgagacat 45418199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 45418636 - 45418471
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||    
T  45418636 ttgtatgttgctgtttcaagagttacatccagcgaaggactaaataaatatattgatcacttatgaagatggtgaatataccaatgtaacgttcaatgtc 45418537  T
Q  104 gtataaggaagtatttcacaatgtatgatgaaacttcttttaacgaattattgataggattaccga 169  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45418536 gtataaggaagtatttcacaatgtgtgatgaaacttcttttaacgaattattgataggattaccga 45418471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 11642488 - 11642356
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  11642488 ttgtatgttgctgtttcaagagttacatccagagaaggactaaata----tattgatcactgatgaaaatggtgaagataccaatgtaacgtctaatgtc 11642393  T
Q  104 g--tataaggaagtatttcacaatgtatgatgaaact 138  Q
    |  ||| |||||||||||| |||||| ||||||||||    
T  11642392 gcatatgaggaagtatttcgcaatgtgtgatgaaact 11642356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 45286485 - 45286621
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |    ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  45286485 ttgtatgttgttgtttcaagagttacatccagagaaggactaaaga----tattgatcactgatgaagatgatgaagataccaatgtaacgtctaatgtc 45286580  T
Q  104 gtat------aaggaagtatttcacaatgtatgatgaaact 138  Q
    ||||      ||| ||||| |||||||||| ||||||||||    
T  45286581 gtatatgaggaagtaagtaattcacaatgtgtgatgaaact 45286621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 16375805 - 16375670
Alignment:
Q  1 caattgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |    |||||||||||||||||||||||||| |||||||||| ||||||||     
T  16375805 caattgtatgatgttgtttcaagagttacatccagagaaggactaaaga----tattgatcactgatgaagatggtgaagataccaatgtgacgtctaac 16375710  T
Q  101 gtcgtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    ||||||||  | | |||||||| |||||| ||||||||||    
T  16375709 gtcgtatatgatgtagtatttcgcaatgtgtgatgaaact 16375670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 349
Target Start/End: Complemental strand, 32277737 - 32277644
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaatt 349  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||    
T  32277737 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtaaaaaatctagttaatt 32277644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 6250453 - 6250540
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  6250453 caccgttaccaattatatattacattttattatttatatgtcaatccctttacaataaacctgggcggagc-cgggtcaaaaatctagt 6250540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 30991680 - 30991768
Alignment:
Q  257 accgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||| | || ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30991680 accgttacctatcatatattgcattttattattcgtatgtcaatccctttacaataaatccgagcggagcacgggtcaaaaatctagta 30991768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 9141352 - 9141225
Alignment:
Q  7 tatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcgta 106  Q
    ||||||| |||||||| ||||||||| || ||||||||||| |    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  9141352 tatgttgctgtttcaaaagttacatctagagaaggactaaaga----tattgatcattgatgatgatggtgaagataccaatgtaacgtctaatgtcgta 9141257  T
Q  107 ta--aggaagtatttcacaatgtatgatgaaa 136  Q
    ||  |||||||||||| |||||| ||||||||    
T  9141256 tatgaggaagtatttcgcaatgtgtgatgaaa 9141225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 48639104 - 48639025
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaa 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||    
T  48639104 caccgttatcaattatatattacattttattatttgtatgtcaatctatttgcaataaatccgagcggagcacgggtcaa 48639025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 40449451 - 40449362
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | || ||| |||||||| ||||||||||||    
T  40449451 caccgttatcaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgatcggggcacgggttaaaaatctagta 40449362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 342
Target Start/End: Complemental strand, 2354159 - 2354042
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||| |||||||||||||||       |||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||| |  |||||    
T  2354159 gtctactatggattatcacatgttatttttt-caccgttacctattatatattgcattttattattcgtatgtcaatccctttacaataaacccaagcgg 2354061  T
Q  324 agcacgggtcaaaaatcta 342  Q
    |||||||||||||||||||    
T  2354060 agcacgggtcaaaaatcta 2354042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 11650188 - 11650276
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  11650188 caccgttatctatcatatattgcattttattattcgtatgtcaatccctttacaataaatccgagcgaagcacgggtcagaaatctagt 11650276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 34838260 - 34838348
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||| || |||||||||||||| ||||    
T  34838260 caccgttatcaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcagaacacgggtcaaaaatttagt 34838348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 9141076 - 9140987
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | |||| |||||||| ||||||||||||||    
T  9141076 caccgttactaattatatatttcattttattattcgtatgtcaatccctttacaataaacccgagcagagcacggatcaaaaatctagta 9140987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 16673909 - 16673998
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||   ||| |||||| | |||||||||||||||    
T  16673909 caccgttaccaattatatattgcattttattatttgtatgtcaatccctttacaataaactcgagtggagcatgagtcaaaaatctagta 16673998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 17648277 - 17648366
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||   ||| |||||| | |||||||||||||||    
T  17648277 caccgttaccaattatatattgcattttattatttgtatgtcaatccctttacaataaactcgagtggagcatgagtcaaaaatctagta 17648366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 4681326 - 4681238
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||| | |||||||||||    
T  4681326 caccgttacctattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacggataaaaaatctagt 4681238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 22773606 - 22773518
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||| ||||||||||||  |||||||||||| ||||||||||||||    
T  22773606 caccgttacctattatatattgcattttattattcgtatgtcaatccttttacaataaattcgagcggagcacgtgtcaaaaatctagt 22773518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 12140587 - 12140467
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||||||||||||| |||||       |||||||| | |||||||||| ||||||||||||| |||||||||||||||||||| || | || |||    
T  12140587 gtctactatagattatcacgtgttatttttt-caccgttacctattatatattgcattttattatttatatgtcaatccctttacaatgaacccgaccgg 12140489  T
Q  324 agcacgggtcaaaaatctagta 345  Q
    ||||||| ||||||||||||||    
T  12140488 agcacggatcaaaaatctagta 12140467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 2852904 - 2852827
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||  ||| |||||||| |||||||||||||||    
T  2852904 attatatattgcattttattattcgtatgtcaatccctttacaataaacttgaacggagcacaggtcaaaaatctagt 2852827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 1566037 - 1565949
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||  |||||||||||| ||||||| | || |||||||||||||||||||||||| | |||||||||||||||||||||| ||||    
T  1566037 caccgttcccaattatatattgcattttactgttcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatatagt 1565949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 9396365 - 9396453
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | ||||||||||  ||||||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||||    
T  9396365 caccgttaactattatatattgtattttattattcgtatgtcaatccttttacattaaacccgagcggagcacgggtcaaaaatctagt 9396453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 22325022 - 22325110
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||| |||| |||||||   |||||||||| ||||||||||||||||    
T  22325022 caccgttaccaattatatattgcattttattattcgtatgtcaatctcttttcaataaactcgagcggagcatgggtcaaaaatctagt 22325110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 40409259 - 40409172
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| ||||||||| || |||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  40409259 caccgttacctattatatattgcattttatt-ttcgtatgtcaatccctttacaataaatccgagcggagcatgggtcataaatctagt 40409172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 22967850 - 22967762
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||   |||  ||||||||||| ||||||||    
T  22967850 cacccttaccaattatatattgcattttattatttgtatgtcaatcccttaacaataaatccttgcgacgcacgggtcaacaatctagt 22967762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 18487929 - 18488008
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaat 339  Q
    |||| |||||| || || |||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  18487929 gttaccaattacattttgcattttattattcgtatgtcaatccctttactataaacccgagcggagcacgggtcaaaaat 18488008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 4680589 - 4680511
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||| | ||| ||| |||||||||||||| |||||    
T  4680589 attatatattgcattttattattcgtatgtcaatctctttacaataaacccgagtggatcacgggtcaaaaatatagta 4680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 27712015 - 27711937
Alignment:
Q  265 caattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctag 343  Q
    |||||||||||| |||||||||||| ||||||||||  ||||| ||||||   ||||||||||||||||||||||||||    
T  27712015 caattatatattgcattttattattcgtatgtcaatatctttataataaactcgagcggagcacgggtcaaaaatctag 27711937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 22968055 - 22967971
Alignment:
Q  56 ttgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcgtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||||| ||||||||||||||| | |||||||| |||||||| ||||||||  |||||||||||| |||||| ||||||||||    
T  22968055 ttgatcacggatgaagatggtgaagacaccaatgtgacgtctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaaact 22967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 342
Target Start/End: Original strand, 35125481 - 35125599
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    |||||||||| ||||||||||||||       |||||||| |||||||||||| |||||||||||   ||| | |||||||||||||||||   |||| |    
T  35125481 gtctactataaattatcacatgttattttttacaccgttaccaattatatattgcattttattatccatatattaatccctttacaataaactcgagcag 35125580  T
Q  324 agcacgggtcaaaaatcta 342  Q
    |||||| ||||||||||||    
T  35125581 agcacgagtcaaaaatcta 35125599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 16362250 - 16362175
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||| | |||||||  ||| ||||||||||||    
T  16362250 attatatagtgcattttattattcgtatgtcaatccctttacaataaacccgagcggaatacgagtcaaaaatcta 16362175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 21128801 - 21128889
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| ||||| ||||||| |  | |||||||   ||||||||||||||    
T  21128801 caccgttaccaattatatattgcattttattattcgtatgtcaattcctttccaataaacccaaacggagcataagtcaaaaatctagt 21128889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 5553650 - 5553592
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    |||| |||||||||||||||| ||||||||||||  |||||||||||||| ||||||||    
T  5553650 caccattatcaattatatatttcattttattattcatatgtcaatcccttaacaataaa 5553592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 16375523 - 16375465
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    |||||||| ||||||||||||||||||||||| | |||||| |||||||| ||||||||    
T  16375523 caccgttaccaattatatattacattttattactcgtatgttaatcccttaacaataaa 16375465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 24787432 - 24787354
Alignment:
Q  266 aattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||||| ||||||||||||| |||||||||||||| | ||||||  || |||  ||||||||||| ||||||||    
T  24787432 aattatatattgcattttattatttttatgtcaatcccttaataataaacttgtgcgacgcacgggtcaacaatctagt 24787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 16491700 - 16491612
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| ||||||||||||  |||||||||||||||  ||||| |||||||||||||  | || |||  |||||| |||||||||||    
T  16491700 caccgttaccaattatatattgtattttattatttgtaaatcaattcctttacaataaacttaagtggaatacgggtgaaaaatctagt 16491612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 21225062 - 21225151
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| |||||||||||| || |||||||||  |||||||||| ||||  |||||| |  | |||| ||||||||||||||| ||||    
T  21225062 caccgttaccaattatatattgcaatttattattcatatgtcaatctctttgaaataaacccaaacggaacacgggtcaaaaatccagta 21225151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 48639556 - 48639471
Alignment:
Q  10 gttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    |||| |||||||||||| |||||||| ||| ||||||| |    |||||| || |||||||||||||||| |||| |||||||||||||||    
T  48639556 gttgctgtttcaagagt-acatccagagaatgactaaaga----tattgaacattgatgaagatggtgaagatacaaatgtaacgtctaat 48639471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 40686239 - 40686185
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    |||| |||||||||||| |||||||||||| | |||||||| |||||| ||||||    
T  40686239 gttaccaattatatattgcattttattattcgcatgtcaattcctttataataaa 40686185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 2527096 - 2527059
Alignment:
Q  307 acaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| || ||||||||||||||||||||||||||    
T  2527096 acaataaacctaagcggagcacgggtcaaaaatctagt 2527059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 23591244 - 23591179
Alignment:
Q  281 tttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaa 346  Q
    ||||||||| || ||||||||| ||| ||||||| | ||  | |||||||||||||||||||||||    
T  23591244 tttattattcgtctgtcaatccatttgcaataaacccgaatgaagcacgggtcaaaaatctagtaa 23591179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 29968285 - 29968418
Alignment:
Q  1 caattgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |    |||||||||||||||||||||||||| |||| |||||||||||||||    
T  29968285 caattgtatgttgttgtttcaagagttacatccaaagaaggactaaaaa----tattgatcactgatgaagatggtgaagatactaatgtaacgtctaat 29968380  T
Q  101 gtcgtata--aggaagtatttcacaatgtatgatgaaa 136  Q
    | ||||||  ||||||||||||||||||| ||||||||    
T  29968381 gccgtatatgaggaagtatttcacaatgtgtgatgaaa 29968418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 52688675 - 52688586
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  52688675 caccgttaccaattatatattgcattttattatttgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagta 52688586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 342
Target Start/End: Complemental strand, 8478631 - 8478514
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    |||||||||||||||||||||||||       |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||  | |||||    
T  8478631 gtctactatagattatcacatgttatttttt-caccgttacctattatatattgcattttattatttgtatgtcaatccctttacaataaacataagcgg 8478533  T
Q  324 agcacgggtcaaaaatcta 342  Q
    |||||| ||||||||||||    
T  8478532 agcacgagtcaaaaatcta 8478514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 28379381 - 28379293
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  28379381 caccattaccaattatatattgcattttattattcgtatgtcaatccctttacaataaatccgagtggagcacgggtcaaaaatctagt 28379293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 47427894 - 47427773
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||| |||||||||||||||       |||||||| |||||||||||| ||||||||||||  ||||||||||| ||||||||||||| ||||||    
T  47427894 gtctactatggattatcacatgttatttttttcaccgttaccaattatatattgcattttattattcatatgtcaatccttttacaataaatccgagcgg 47427795  T
Q  324 agcacgggtcaaaaatctagta 345  Q
    ||||||| | ||||||||||||    
T  47427794 agcacggataaaaaatctagta 47427773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 47428140 - 47428008
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||||||||||||||||||||||||  |||||||    || | ||||||||||||||||||||||||||| |||| |||||||| ||||| |||    
T  47428140 ttgtatgttgttgtttcaagagttacatccaaagaaggac----tatagatattgatcactgatgaagatggtgaagatactaatgtaacatctaacgtc 47428045  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  || |||||||| ||||||| ||||||||||    
T  47428044 gtatatgagaaagtattttacaatgtgtgatgaaact 47428008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 44500935 - 44501017
Alignment:
Q  257 accgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaat 339  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||    
T  44500935 accgttataaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaat 44501017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 41851232 - 41851100
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatat-accaatgtaacgtctaatgt 102  Q
    |||||||||| |||||||||||||||||| || ||||||||||| | ||     |||||||||||||||||||||| || ||||||||||||||||||||    
T  41851232 ttgtatgttgatgtttcaagagttacatctagagaaggactaaagatat-----gatcactgatgaagatggtgaagataaccaatgtaacgtctaatgt 41851138  T
Q  103 cgtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    | ||||   ||||||||||| |||||| ||||||||||    
T  41851137 catatattgggaagtatttcgcaatgtgtgatgaaact 41851100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 18000336 - 18000251
Alignment:
Q  259 cgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||| |||||||||||| |||||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  18000336 cgttaccaattatatattgcattttattattcgtttgtcaatccctttacaataaacccgagcggagcacgggtaaaaaatctagt 18000251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 47769368 - 47769445
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  47769368 attatatattgcattttattattcgtatgtcaatccctttacaataaatccgagcggagcacaagtcaaaaatctagt 47769445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 346
Target Start/End: Complemental strand, 53143101 - 53143009
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgga--gcacgggtcaaaaatctagtaa 346  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| ||||||    
T  53143101 caccgttatcaattatatattgcattttattatttgtatgtcaatccctttacaataaacccgagcagagcgcacgggtaaaaaatatagtaa 53143009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 2479118 - 2479030
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||| |||  ||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  2479118 caccgttaccaattatatattgcattttatcattcatatgtcaatccctttacaataaacccgagcagagcacgggtcaaaaatctagt 2479030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 2479397 - 2479265
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||  ||||||||||||||||||||| ||| ||||||| |    ||||||| |||||||||||||||||| |||| |||||||||||||||       
T  2479397 ttgtatgttactgtttcaagagttacatccagagaatgactaaaga----tattgattactgatgaagatggtgaagatactaatgtaacgtctaattct 2479302  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  || ||||||||| |||||||||||||||||    
T  2479301 gtatatgagaaagtatttcgcaatgtatgatgaaact 2479265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 8119284 - 8119372
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||| ||||||| | |||| |||||||||| |||||||||||    
T  8119284 caccgttaacaattatatattgcattttattattcgtatgtcaatccctttgcaataaacccgagcagagcacgggtaaaaaatctagt 8119372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 28813905 - 28813993
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| ||||||| |||| |||||||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  28813905 caccgttaccaattatatattgcattttaatattcgtatgtcaattccttcacaataaatccgatcggagcacgggtcaaaaatctagt 28813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 12795568 - 12795493
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  12795568 attatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcgaagcacgggtcaaaaatcta 12795493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 48076778 - 48076853
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  48076778 atatattgcattttattattcgtatgtcaatccctttacaataaactcgagcggagcacgggtcaaaaatctagta 48076853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 2177820 - 2177901
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaa 337  Q
    |||||||| |||||||||||| |||||||||||| ||||| |||||||||||||||||| | ||||||| ||||||||||||    
T  2177820 caccgttaccaattatatattgcattttattattcgtatgccaatccctttacaataaacccgagcggaacacgggtcaaaa 2177901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 18000638 - 18000511
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||| ||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||         |||||||||||||||||||||||    
T  18000638 ttgtatattgctgtttcaagagttacatccagagaaggactaattaaagatattgatcactgatgaag---------ataccaatgtaacgtctaatgtc 18000548  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
     ||||  |||||||||||  |||| | ||||||||||    
T  18000547 ttatatgaggaagtattttgcaatttgtgatgaaact 18000511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 24050701 - 24050793
Alignment:
Q  48 taaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcgtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||   ||||| ||||||||||    
T  24050701 taaagatattgatcactgatgaagatggtgaagataccaatgtaacatctaatgtcgtatatgaggaagtattttgtaatgtgtgatgaaact 24050793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 23952199 - 23952123
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctag 343  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||| | ||||||||    
T  23952199 attatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtgataaatctag 23952123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 32010554 - 32010482
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  32010554 atatattgcattttattattcgtatgtcaatccctttacaataaacccaagcggagcacgggtcaaaaatcta 32010482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 36639755 - 36639843
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||| ||||||||||||| | ||||| || ||||||||||||||||||    
T  36639755 caccgttacctattatatattgcattttattattcgtatgtcaattcctttacaataaacccgagcgaagtacgggtcaaaaatctagt 36639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 54652968 - 54652880
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||   || |||||||||| | |||||||||||    
T  54652968 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaactcgaacggagcacggataaaaaatctagt 54652880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 22293671 - 22293753
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaa 338  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||  |  ||||||||||| |||||    
T  22293671 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaatccaattggagcacgggtaaaaaa 22293753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 29968566 - 29968652
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| ||||| |||||| |||||||||||||| ||||||||| | |||||||||||| ||| ||||||||    
T  29968566 caccgttaccaattatatattgcatttcattattcgtatgtcaatccctatacaataaacccgagcggagcacgagtctaaaatcta 29968652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 8396962 - 8396881
Alignment:
Q  265 caattatatattacattttattatttgtatgtcaatcccttta-caataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||||||| |||||||||||| |||||||||||| |||  ||||||| | ||||||||||||||||||||||||||||    
T  8396962 caattatatattgcattttattattcgtatgtcaatcctttttgcaataaacccgagcggagcacgggtcaaaaatctagta 8396881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 21580907 - 21580846
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcac 328  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  21580907 attatatatgacattttattatttgtaagtcaatccctttacaataaatccgagcggagcac 21580846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 10466746 - 10466877
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| ||||||||||| || |||||  ||||||||||| |    ||||||| |||| |||||||| |||| |||| |||||||||||||| |||    
T  10466746 ttgtatgttgctgtttcaagagctagatccaaagaaggactaaaga----tattgatgactggtgaagatgatgaaaatactaatgtaacgtctaacgtc 10466841  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaac 137  Q
    |||||  |||||||||||  |||||| |||||||||    
T  10466842 gtatatgaggaagtatttagcaatgtgtgatgaaac 10466877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 15465002 - 15465069
Alignment:
Q  278 cattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||| ||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  15465002 catttgattatttgtctgtcaagccctttacaataaacccgagcggagcacgggtcaaaaatctagta 15465069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 4942387 - 4942453
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagc 326  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||    
T  4942387 gttattaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagc 4942453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 7822324 - 7822382
Alignment:
Q  280 ttttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaa 338  Q
    |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  7822324 ttttattatttgtacgtcaatccctttacaataaacccgagcggagcacgggtcaaaaa 7822382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 37325309 - 37325387
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||||| ||||||||||||  ||||||||||  ||||||||||| | ||| ||||||||||||||||||||||||    
T  37325309 attatatattgcattttattattcttatgtcaatctatttacaataaacccgagtggagcacgggtcaaaaatctagta 37325387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 52688795 - 52688741
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaa 310  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  52688795 caccgttaccaattatatattgcattttattatttgtatgtcaatccctttacaa 52688741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 24050939 - 24051016
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtc 333  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||  ||||||||||| | ||||||||||||||||    
T  24050939 caccgttactaattatatattgcattttattattcgtatgtcaatctttttacaataaacccgagcggagcacgggtc 24051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 41850953 - 41850864
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||||| | ||| | | |||| || ||||||||||||    
T  41850953 caccgttatcaattatatattgcattttattattcgtatgtcaattcctttacgataaaaccgagtgaaacacgagttaaaaatctagta 41850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 14989344 - 14989432
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | ||||||||||  |||||| |||| ||||||||||| |||||| ||||| | || || |||||||||||||||||||||    
T  14989344 caccgttaactattatatattgaattttagtattcgtatgtcaatctctttacgataaacccgaacgaagcacgggtcaaaaatctagt 14989432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 7812818 - 7812902
Alignment:
Q  256 caccgttatcaattatatattacatttt---attatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||||||||||||||| ||||||   ||||||||||||       |||||||| ||| | |||||||||||||||||||||||||||    
T  7812818 caccgttatcaattatatattgcatttttttattatttgtatg-------ctttacaaaaaacccgagcggagcacgggtcaaaaatctagt 7812902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 104701 - 104833
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||| |    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  104701 ttgtatgttattgtttcaagagtaacatccagagaaggactaaaga----tattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtc 104796  T
Q  104 g--tataaggaagtatttcacaatgtatgatgaaact 138  Q
    |  |||||||||||||||| |||||| ||||||||||    
T  104797 gtatataaggaagtatttctcaatgtgtgatgaaact 104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 127350 - 127482
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||| |    ||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  127350 ttgtatgttattgtttcaagagtaacatccagagaaggactaaaga----tattgatcactgacgaagatggtgaagataccaatataacgtctaatgtc 127445  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||| |||||| ||||||||||    
T  127446 gtatatgaggaagtatttcgcaatgtgtgatgaaact 127482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 104984 - 105068
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||| | |||||||||||| |||| |||||||||||| |||||| | ||||| |||||||||||||||||||||    
T  104984 gttaccaattatataatgcattttattattcgtatctcaatccctttataataaacccgagcgaagcacgggtcaaaaatctagt 105068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 127634 - 127718
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||| | |||||||||||| |||| |||| ||||||| || ||| | || || || ||||||||||||||||||    
T  127634 gttaccaattatataatgcattttattattcgtatctcaacccctttataacaaacccgaacgaaggacgggtcaaaaatctagt 127718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 19123225 - 19123357
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| |||||||||||||| |||||| ||||||||||| |    ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  19123225 ttgtatgttgctgtttcaagagttatatccagagaaggactaaaga----tattgatcattgatgaagatggtgaagataccaatgtaacgtctaatgtc 19123320  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  ||||||||||||||||||| ||||||||||    
T  19123321 gtatatgaggaagtatttcacaatgtgtgatgaaact 19123357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 14164571 - 14164439
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| |||||||| |||||||||||| ||||||||||| |    |||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  14164571 ttgtatgttgctgtttcaaaagttacatccagagaaggactaaaga----tattgatcgctgatgaagatggtgaagataccaatgtaacgtctaatgtc 14164476  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||  |||||| ||||||||||    
T  14164475 gtatatgaggaagtattttgcaatgtgtgatgaaact 14164439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 19123501 - 19123589
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  19123501 caccgttaccaattatatattacattttattatttgtatgtcaatccctttacaataaatccgagtagagcacgggtcaaaaatctagt 19123589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 41511683 - 41511773
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaa 346  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  41511683 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagtaa 41511773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 12441704 - 12441615
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12441704 caccgttatcaattatatactatattttattattcgtatgccaatccctttacaataaacctgagcggagcacgggtcaaaaatctagta 12441615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 31486353 - 31486221
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| | ||||||||||||||||||| ||||||||||| |    |||||||||||||||||||||||||| |||||||||||| |||||| |||    
T  31486353 ttgtatgttgctttttcaagagttacatccagagaaggactaaaga----tattgatcactgatgaagatggtgaagataccaatgtaatgtctaacgtc 31486258  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||  |||||| ||||||||||    
T  31486257 gtatatgaggaagtattttgcaatgtgtgatgaaact 31486221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 31487368 - 31487237
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||||||||||||||||||||||||  |||||||    |||| |||||||||||||||||||||||||||  |||||||||||| ||||| |||    
T  31487368 ttgtatgttgttgtttcaagagttacatccaaagaaggac----taaagatattgatcactgatgaagatggtgaa-gtaccaatgtaacatctaacgtc 31487274  T
Q  104 g--tataaggaagtatttcacaatgtatgatgaaact 138  Q
    |  ||| |||||||||||||||||||  |||||||||    
T  31487273 gcatatgaggaagtatttcacaatgtgcgatgaaact 31487237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 10409926 - 10410012
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  10409926 caccgttatctattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagtggagcacgggtcaaaaatcta 10410012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 23141145 - 23141237
Alignment:
Q  48 taaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcgtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||| |||||| ||||||||||    
T  23141145 taaagatattgatcactgatgaagatggtgaagataccaatgtaacgtctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaaact 23141237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 23141338 - 23141460
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaat--tatatattacattttattatttgtatgtcaatccctttacaataaatctgagc 321  Q
    ||||||||| ||||||||| |||||       |||| ||||||||  |||||||| |||||||||||| |||||||||||||||||||||||| ||| ||    
T  23141338 gtctactatggattatcacgtgttatttttttcaccattatcaatattatatattgcattttattattcgtatgtcaatccctttacaataaacctgtgc 23141437  T
Q  322 ggagcacgggtcaaaaatctagt 344  Q
    |||||||||||| ||||||||||    
T  23141438 ggagcacgggtctaaaatctagt 23141460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 38110586 - 38110672
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||    
T  38110586 caccgttaccaaatatatattgcattttattatttgtatgtcaatccctttacaataaacccgaacggagcacaggtcaaaaatcta 38110672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 41092354 - 41092266
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||    
T  41092354 caccgttacctattatatattgcattttattattcgtatgtcaatcactttacaataaacccgagcggagcactggtcaaaaatctagt 41092266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 9487417 - 9487327
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaa 347  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||| || |||  ||||||||||||||    
T  9487417 caccgttatcaattatatattgcattttattatttgtatgtcaattcctttacaataaattcgagcggaacatggg-aaaaaatctagtaaa 9487327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 7129214 - 7129292
Alignment:
Q  266 aattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| | ||||||||||||||    
T  7129214 aattatatattgcattttattattcgtatgtcaatccctttacaataaacctgagcgaagcatgagtcaaaaatctagt 7129292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 16306105 - 16306198
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaatt 349  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| | || ||||||   ||||||||||||||| ||||    
T  16306105 caccgttaccaattatatattacattttattattcgtatgtcaatccttttacaataaacccgaacggagcggaggtcaaaaatctagttaatt 16306198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 16538208 - 16538288
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaattc 350  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||| | |||||||||||| |||||||||||||| |||||    
T  16538208 atatattgcattttattattcgtatgtcaatccctctacaataaacccgagcggagcacgcgtcaaaaatctagttaattc 16538288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 43394652 - 43394564
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||| | ||||| |||||||||||||    
T  43394652 caccgttacctattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcgaaacacggatcaaaaatctagt 43394564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 26522784 - 26522705
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaa 346  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||| |||| ||||||||| ||||||    
T  26522784 attatatattgcattttattattcgtatgtcaatctctttacaataaatccgagcggaacacgagtcaaaaatatagtaa 26522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 14164291 - 14164205
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| ||||||||||||  ||||||||||| ||||||||||| | || |||||||||| |||||||||||    
T  14164291 caccgttaccaattatatattgcattttattattcatatgtcaatccttttacaataaacccgaacggagcacggatcaaaaatcta 14164205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 19322769 - 19322855
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    ||||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||    || |||||||||||||||||||||    
T  19322769 caccgttatcaattatatattgcattttattatccgtatgtcaattcctttacaataaactcaagtggagcacgggtcaaaaatcta 19322855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 7672819 - 7672742
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||| |||||||| ||| |||||||||||||| ||||||||| | ||||||||||||| |||||||||||||    
T  7672819 attatatattgcattttatcattcgtatgtcaatccctatacaataaacccgagcggagcacggatcaaaaatctagt 7672742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 20563309 - 20563386
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaa 337  Q
    |||| |||||||||||| |||||||||||| | ||||||||||||||||||||||   ||||||||||||||||||||    
T  20563309 gttaccaattatatattgcattttattattcgcatgtcaatccctttacaataaactcgagcggagcacgggtcaaaa 20563386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 16529355 - 16529449
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaattc 350  Q
    |||||||| | || ||||||| ||||| |||||| ||||||||||||||||||||||||   ||||||||||||| ||||||||| ||| |||||    
T  16529355 caccgttacctatcatatattgcatttcattattcgtatgtcaatccctttacaataaactcgagcggagcacggatcaaaaatccagttaattc 16529449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 38004109 - 38004044
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggt 332  Q
    |||||||||| ||||||||| ||  ||||| |||| |||||||||||| | |||||||||||||||    
T  38004109 attatatattgcattttatttttcatatgtaaatctctttacaataaacccgagcggagcacgggt 38004044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 5429625 - 5429745
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| ||||||    
T  5429625 gtctactatagattatcacgtgttatttttttcaccgttatcaattatatattacattttattattcgcatgtcaatccctttaccataaatccgagcgg 5429724  T
Q  324 agcacgggtcaaaaatctagt 344  Q
    |||||||||||||||||||||    
T  5429725 agcacgggtcaaaaatctagt 5429745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 38685471 - 38685603
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| |    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38685471 ttgtatgttgttgtttaaagagttacatccagagaaggactaaaaa----tattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtc 38685566  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  ||||| |||||  |||||| ||||||||||    
T  38685567 gtatatgaggaaatattttgcaatgtgtgatgaaact 38685603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 21618810 - 21618898
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  21618810 caccgttaccaattatatattgcattttattatttgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagt 21618898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 39282406 - 39282488
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39282406 gttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 39282488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 23481020 - 23480888
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| | ||||||||||||||||||| ||||||||||| |    |||||||||||||||||||||||||| |||||||||| |||||||  |||    
T  23481020 ttgtatgttgctatttcaagagttacatccagagaaggactaaaga----tattgatcactgatgaagatggtgaagataccaatgtgacgtctagcgtc 23480925  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||| |||||| ||||||||||    
T  23480924 gtatatgaggaagtatttcgcaatgtgtgatgaaact 23480888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 12116075 - 12116163
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12116075 caccgttacctattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagt 12116163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 16165276 - 16165187
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  16165276 caccgttaccaattatatattgcatttcattattcgtatgtcaatccctttacaataaactcgagcggagcacgggtcaaaaatctagta 16165187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 25931420 - 25931332
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||| || ||||||| ||||||||||||||||||    
T  25931420 caccgttaccaattatatattgcattttattattcgtatgtcaatcactttacaataaacctaagcggagtacgggtcaaaaatctagt 25931332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 28949593 - 28949505
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  28949593 caccgttacctattatatattgcattttattattcgtatgtcaatccttttacaataaacccgagcggagcacgggtcaaaaatctagt 28949505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 6537192 - 6537105
Alignment:
Q  257 accgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||| |||| |||||||| |||||||||||||    
T  6537192 accgttatcaattatatattgcattttattattcgtatgtcaacctctttacaataaatccgagcagagcacggttcaaaaatctagt 6537105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 52407562 - 52407475
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaa 347  Q
    |||||||| |||||||| |||||||||||| ||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  52407562 gttatcaaatatatattgcattttattattcgtatggcaatccctttacaataaactcgagcggagcacgggtcaaaaatctagtaaa 52407475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 18913118 - 18913204
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||| | |||||||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||||||||||    
T  18913118 caccgtgaccaattatatattgcattttattattcgtatatcaatccctttacaataaatttgagcggagcacggatcaaaaatcta 18913204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 27296724 - 27296810
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  27296724 caccgttacctattatatattgcattttattattcgtatgtcaatccctttacaataaactcgagcggagcacgggtcaaaaatcta 27296810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 48411667 - 48411581
Alignment:
Q  258 ccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| | |||||| |||||||| |||||||||||    
T  48411667 ccgttatctattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggggcacgggttaaaaatctagt 48411581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 1648266 - 1648354
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| ||| |||||||||||| |||||||||||| ||||| |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  1648266 caccattaccaattatatattgcattttattattcgtatgccaatccctttacaataaacccgagcggagcacaggtcaaaaatctagt 1648354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 4099978 - 4099890
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| |||||||||||    
T  4099978 caccgttaccaattatatattgaattttattattcgtatgtcaatccctttacaataaacccgagcggagcactggtaaaaaatctagt 4099890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 47791420 - 47791504
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||||| ||||||||||||  ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  47791420 gttaccaattatatattgcattttattattcatatgtcaattcctttacaataaatccgagcggagtacgggtcaaaaatctagt 47791504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 44451748 - 44451662
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaa 346  Q
    |||| |||||||||||| |||||||||||| |||| |||||||||||| |||||| |  ||||||||||||||||||||||||||||    
T  44451748 gttaccaattatatattgcattttattattcgtatatcaatccctttataataaaccctagcggagcacgggtcaaaaatctagtaa 44451662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 3226567 - 3226481
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctg-agcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  3226567 caccgttaccaattatatattgcattt-attattcgtatgtcaatccctttacaataaacccgaagcggagcacgggtcaaaaatcta 3226481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 5429385 - 5429488
Alignment:
Q  15 tgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcgtata--agga 112  Q
    ||||||||||||||||||||| ||||||||||| |    |||||||||||||||||||||||||| |||| |||||||| | |||| |||||||  ||||    
T  5429385 tgtttcaagagttacatccagagaaggactaaaga----tattgatcactgatgaagatggtgaagatacaaatgtaacatttaatatcgtatatgagga 5429480  T
Q  113 agtatttc 120  Q
    ||||||||    
T  5429481 agtatttc 5429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 52741032 - 52741123
Alignment:
Q  264 tcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaattcttaat 355  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| | || | || ||||||| ||||||||| |||||| |||||    
T  52741032 tcaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgaacagaacacgggtaaaaaatctaataaatttttaat 52741123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 44264524 - 44264610
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| |||||||||||| |||||| ||  ||||||||||||| |  ||||||||||||||||||||||||    
T  44264524 caccgttaccaattatatattgcattttattattcgtatgttaaatcctttacaataaaccctagcggagcacgggtcaaaaatcta 44264610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 319021 - 319096
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctag 343  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||  |||||||||||| ||||||||||||||    
T  319021 attatatattatattttattattcgtatgtcaattcctttacaataaacttgagcggagcac-ggtcaaaaatctag 319096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 21882778 - 21882866
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||   |||  ||||||||||| ||||||||    
T  21882778 cacccttaccaattatatattgcattttattatttgtatgtcaatcccttaacaataaatccttgcgacgcacgggtcaacaatctagt 21882866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 21618690 - 21618744
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaa 310  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  21618690 caccgttaccaattatatattgcattttattatttgtatgtcaatccctttacaa 21618744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 45416940 - 45416854
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||||||||||  |||| |||||||||||| |||||||||||| |||| |||||| ||||| | |||||||||||||| ||||    
T  45416940 caccgttatcaattacttattgcattttattattcgtatgtcaatccttttataataaacctgagtgtagcacgggtcaaaattcta 45416854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 21882573 - 21882657
Alignment:
Q  56 ttgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcgtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||||| ||||||||||||||| | |||||||| |||||||| ||||||||  |||||||||||| |||||| ||||||||||    
T  21882573 ttgatcacggatgaagatggtgaagacaccaatgtgacgtctaacgtcgtatatgaggaagtatttcgcaatgtgtgatgaaact 21882657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 1155750 - 1155675
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||   |||||||||| | ||||||||||||    
T  1155750 attatatattgcattttattattcgtatgtcaatccctttataataaactcgagcggagcatgagtcaaaaatcta 1155675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 24595619 - 24595710
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaa 347  Q
    |||||||| | |||||||||| |||||||||||   |||||||||| |||||||||||| | || ||||||||| ||||||| |||||||||    
T  24595619 caccgttacctattatatattgcattttattatgcatatgtcaatctctttacaataaacccgatcggagcacgagtcaaaattctagtaaa 24595710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 51114323 - 51114386
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtc 333  Q
    ||||||| |||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||    
T  51114323 atatattgcattttattattcgtatatcaatctctttacaataaatccgagcggagcacgggtc 51114386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 38685717 - 38685807
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    ||||||||||||||||||| |||||       |||||||| |||||||||||| ||||||||||||  ||||| |||||||||| ||||||    
T  38685717 gtctactatagattatcacgtgttatttttttcaccgttaccaattatatattgcattttattattcttatgttaatccctttaaaataaa 38685807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 44099311 - 44099254
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataa 313  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||    
T  44099311 caccgttacctattatatattgcattttattattcgtatgtcaatccctttacaataa 44099254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 42491669 - 42491588
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatct--gagcggagcacgggtcaaaaatctagtaaa 347  Q
    |||||||||| |||||||||||| |||||||||||  |||| ||||||     ||||||||||||||||||||||||||||||    
T  42491669 attatatattgcattttattattcgtatgtcaatct-tttaaaataaacacacgagcggagcacgggtcaaaaatctagtaaa 42491588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 51271812 - 51271761
Alignment:
Q  279 attttattatttgtatgtcaatccctttacaataaatctgagcggagcacgg 330  Q
    ||||||||||| ||||||||||||  |||||||||||| |||||||||||||    
T  51271812 attttattattcgtatgtcaatcctattacaataaatccgagcggagcacgg 51271761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 46533409 - 46533483
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||   | |||  ||||||||||| ||||||||    
T  46533409 atatattacattttattattcgtatgttaatcccttaacaataaactcgtgcgacgcacgggtcaacaatctagt 46533483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 23480745 - 23480687
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    |||||||| ||||||||||||  ||||||||||| |||||||||||  || ||||||||    
T  23480745 caccgttaccaattatatattgtattttattattcgtatgtcaatcagttaacaataaa 23480687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 71364 - 71232
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||| ||||||||||||| |||||||| ||| ||||||| |    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  71364 ttgtatgttattgtttcaagagtaacatccagagaaagactaaaga----tattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtc 71269  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
     ||||  ||||||||||||||||||| ||||||||||    
T  71268 atatatgaggaagtatttcacaatgtgtgatgaaact 71232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 70664 - 70580
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||| | |||||||||||| |||| |||||||||| |||||||| | ||||| |||| ||||||||||||||||    
T  70664 gttaccaattatataatgcattttattattcgtatctcaatcccttaacaataaacccgagcgaagcatgggtcaaaaatctagt 70580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 1394083 - 1394215
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||| ||||||||||||||||||| || |||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1394083 ttgtatgttattgtttcaagagttacatctagagaaggactaaa----tatattgatcactgatgaagatggtgaagataccaatgtaacgtctaatgtc 1394178  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
     ||||  | ||||||||||||||||| | ||||||||    
T  1394179 atatatgaagaagtatttcacaatgtgttatgaaact 1394215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 29202796 - 29202884
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  29202796 caccgttaccaattatatattacattttattatccgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagt 29202884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 344
Target Start/End: Original strand, 1394331 - 1394450
Alignment:
Q  225 tctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgga 324  Q
    |||||||| ||||||||| |||||       |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |||    
T  1394331 tctactatggattatcacgtgttatttttttcaccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacctgagagga 1394430  T
Q  325 gcacgggtcaaaaatctagt 344  Q
    ||||||||||||||| ||||    
T  1394431 gcacgggtcaaaaatttagt 1394450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 17905560 - 17905478
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  17905560 gttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatcta 17905478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 25068563 - 25068682
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||| |||||||||||||||       ||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||    
T  25068563 gtctactatggattatcacatgttatttttt-cactgttatctattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcgg 25068661  T
Q  324 agcacgggtcaaaaatctagt 344  Q
    ||||||| |||||||||||||    
T  25068662 agcacggatcaaaaatctagt 25068682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 34294603 - 34294689
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||||| | |||||||||||||||||||||||||    
T  34294603 caccgttatcaattatatattgcattttattattcgtacgtcaattcctttacaataaacccgagcggagcacgggtcaaaaatcta 34294689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 9829322 - 9829411
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| | |||||||||| |||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  9829322 caccgttacctattatatattgcattttattattcgtatatcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagta 9829411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 17203574 - 17203667
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaatt 349  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||||    
T  17203574 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagtggagcacgggtaaaaaatctagttaatt 17203667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 4099641 - 4099552
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||  |||||||||||    
T  4099641 caccgttactaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtttaaaatctagta 4099552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 17905842 - 17905710
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||||||||||||| ||||||||| |  ||| ||||| | |    |||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  17905842 ttgtatgttgttgtttcaacagttacatcaaaagaatgactacaga----tattgatcactgatgaagatggtgaggatacgaatgtaacgtctaatgtc 17905747  T
Q  104 g--tataaggaagtatttcacaatgtatgatgaaact 138  Q
    |  |||||||||||||||  |||||| ||||||||||    
T  17905746 gtatataaggaagtattttgcaatgtgtgatgaaact 17905710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 4810756 - 4810678
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||| | |||   ||||| ||||||||||||||||    
T  4810756 attatatattgcattttattattcgtatgtcaatctctttacaataaacccgagtaaagcacaggtcaaaaatctagta 4810678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 23622963 - 23623041
Alignment:
Q  266 aattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||| ||||||||||||||||| |||||||||||  |||| ||||||   ||||||||||  |||||||||||||||    
T  23622963 aattatgtattacattttattattggtatgtcaatcattttataataaactcgagcggagcaaaggtcaaaaatctagt 23623041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 6036634 - 6036586
Alignment:
Q  296 tcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||    
T  6036634 tcaatccctttacaataaactcgagcggagcacgggtcaaaaatctagt 6036586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 23902752 - 23902802
Alignment:
Q  294 tgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||||||||||||||  || ||||||||||||||||||| |||||    
T  23902752 tgtcaatccctttacaataaacttgtgcggagcacgggtcaaaaacctagt 23902802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 26831867 - 26831802
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagc 321  Q
    |||||||||||||||||||||  ||||||||||| |||||| |||   ||||||||||||| ||||    
T  26831867 caccgttatcaattatatattgtattttattattcgtatgttaatttttttacaataaatccgagc 26831802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 32207994 - 32207949
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatc 301  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  32207994 caccattatcaattatatattgcattttattatttctatgtcaatc 32207949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 53047276 - 53047148
Alignment:
Q  5 tgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcg 104  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    ||||||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  53047276 tgtatgttgctgtttcaagagttacatccagagaaggactaaata----tattgatcagtgatgaagatggtgaaaataacaatgtaacgtttaatgtcg 53047181  T
Q  105 tata--aggaagtatttcacaatgtatgatgaa 135  Q
    ||||  ||||||||||||||||||| |||||||    
T  53047180 tatatgaggaagtatttcacaatgtgtgatgaa 53047148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 47501243 - 47501152
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaa 347  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  47501243 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagtaaa 47501152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 260 - 345
Target Start/End: Original strand, 51654740 - 51654825
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  51654740 gttatcaattatatattgcattttattatttgtatgtcaatccctttacaataaacccgagcggagcaccggtcaaaaatctagta 51654825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 17757725 - 17757857
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||||||||||||||||||||||| || |||||||| || |    | |||||||||||||||||||||||| |||||||||| ||||||||  ||    
T  17757725 ttgtatgttgttgtttcaagagttacatctagagaaggactgaaga----tgttgatcactgatgaagatggtgaagataccaatgtgacgtctaacatc 17757820  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||| |||||| ||||||||||    
T  17757821 gtatacgaggaagtatttcgcaatgtgtgatgaaact 17757857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 19059045 - 19059177
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||||||||||||||||||||||| || |||||||| || |    | |||||||||||||||||||||||| |||||||||| ||||||||  ||    
T  19059045 ttgtatgttgttgtttcaagagttacatctagagaaggactgaaga----tgttgatcactgatgaagatggtgaagataccaatgtgacgtctaacatc 19059140  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||| |||||| ||||||||||    
T  19059141 gtatacgaggaagtatttcgcaatgtgtgatgaaact 19059177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 20876577 - 20876491
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  20876577 caccgttaccaattatatattgcattttattattcgtatgtcaatccttttacaataaatccgagcggaacacgggtcaaaaatcta 20876491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 10267379 - 10267464
Alignment:
Q  259 cgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| || ||||||||||||||||||    
T  10267379 cgttaccaattatatattacattttattattcgtatgtcaatccctttacaataaaccagagcgaagtacgggtcaaaaatctagt 10267464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 860684 - 860772
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||| | ||||||||||||||| |||||||||||    
T  860684 caccgttaccaattatatattgcattttattattcgtatgtcaatctctttacaataaaccagagcggagcacgggtaaaaaatctagt 860772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 37760883 - 37760971
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  37760883 caccgttacctattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcagagcacgggtcaaaaatctagt 37760971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 11454797 - 11454872
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  11454797 atatattgcattttattattcgtatgtcaatccctttacaataaatccgagcggagcacggatcaaaaatctagta 11454872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 2702188 - 2702318
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| |||||||||||||||||| || ||||||||||| |    |||||||  || ||||||||||| || ||||||||||||||||||||||     
T  2702188 ttgtatgttgctgtttcaagagttacatctagagaaggactaaaga----tattgattgctaatgaagatggtcaagataccaatgtaacgtctaatgtg 2702283  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaa 136  Q
    |||||  |||||||||||| |||||| ||||||||    
T  2702284 gtataggaggaagtatttcgcaatgtgtgatgaaa 2702318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 38886922 - 38886834
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||   ||||||||||||| |||||||||||||    
T  38886922 caccgttaccaattatatattgcattttattatttatatgtcaatccctttgcaataaactcgagcggagcacggatcaaaaatctagt 38886834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 23777260 - 23777338
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||||| ||||||||||||  |||||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  23777260 attatatattgcattttattattcatatgtcaatctctttacaataaacccgagcggagcacgggtcaaaaatctagta 23777338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 344
Target Start/End: Original strand, 24365967 - 24366041
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||| |||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  24365967 atatattgcattttattattcgtatgtcaatctctttacaataaacccgagcggagcacgggtcaaaaatctagt 24366041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 11523322 - 11523401
Alignment:
Q  265 caattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||||||| |||||||||||| |||| |||||||||||||||| || | |||||||||||| ||||||||||||||    
T  11523322 caattatatattgcattttattattcgtatatcaatccctttacaatcaacccgagcggagcacgagtcaaaaatctagt 11523401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 836904 - 836815
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| | |||||||||| |||||||||||||||||||||||| ||||||||||||    |||||| |||| |||||||||||||||    
T  836904 caccgttacctattatatattgcattttattatttgtatgtcaatcactttacaataaactcaagcggaccacgagtcaaaaatctagta 836815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 36642815 - 36642736
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaa 346  Q
    |||||||||| |||||||||||  |||||||||||||||||||| |||   ||||||||||||| |||||||||||||||    
T  36642815 attatatattgcattttattatccgtatgtcaatccctttacaacaaactcgagcggagcacggatcaaaaatctagtaa 36642736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 2730927 - 2730990
Alignment:
Q  279 attttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    ||||||||||| ||||||||||||||||||| |||| | |||||||||||| ||||||||||||    
T  2730927 attttattattcgtatgtcaatccctttacattaaacccgagcggagcacgtgtcaaaaatcta 2730990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 53046999 - 53046926
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacg 329  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| | |||||||||||   ||||||||||||    
T  53046999 caccgttaccaattatatattgcattttattattcgtatgtcaattcatttacaataaactcgagcggagcacg 53046926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 45514311 - 45514223
Alignment:
Q  257 accgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||| | || ||||||| |||||||||||| |||| ||||||| ||||| |||||   ||||||| ||||||||||||||||||||    
T  45514311 accgttacctatcatatattgcattttattattcgtatatcaatccttttacgataaacacgagcggaacacgggtcaaaaatctagta 45514223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 17758006 - 17758051
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatc 301  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  17758006 caccgttaccaattatatattacattttattattcgtatgtcaatc 17758051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 19059326 - 19059371
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatc 301  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  19059326 caccgttaccaattatatattacattttattattcgtatgtcaatc 19059371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 342
Target Start/End: Original strand, 2702434 - 2702548
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||| ||||||||| |||||       |||||||| ||||||||||||  ||||||||||| |||||  ||||||||||| ||||| ||   | |    
T  2702434 gtctactatggattatcacgtgttagttttttcaccgttaccaattatatattgtattttattattcgtatggtaatccctttaccataaa-ct---cag 2702529  T
Q  324 agcacgggtcaaaaatcta 342  Q
    |||||||||||||||||||    
T  2702530 agcacgggtcaaaaatcta 2702548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 46452593 - 46452640
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    |||||||||| |||||||||||| |||| |||||||||||| ||||||    
T  46452593 attatatattgcattttattattcgtatatcaatccctttaaaataaa 46452640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 25916776 - 25916700
Alignment:
Q  259 cgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaa 335  Q
    ||||| |||||||||||| ||||||||| ||  ||||||||||| || |||||||| | | |||  |||||||||||    
T  25916776 cgttaccaattatatattgcattttatttttcatatgtcaatcctttaacaataaacccgtgcgacgcacgggtcaa 25916700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 41327158 - 41327247
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  41327158 caccgttatcaattatatattgcattttattattcgtatgtcaatccctttacaataaatccgagcggagcacgggttaaaaatctagta 41327247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 833368 - 833267
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaattcttaat 355  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || |||||    
T  833368 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagttatttgttaat 833269  T
Q  356 tg 357  Q
    ||    
T  833268 tg 833267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 37130847 - 37130758
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  37130847 caccgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgagtcaaaaatctagta 37130758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 2132056 - 2131972
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  2132056 gttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaatctagt 2131972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 10128870 - 10128778
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaat 348  Q
    ||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  10128870 caccgctaccaattatatatttcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacaggtcaaaaatctagtaaat 10128778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 14335911 - 14335827
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  14335911 gttatcaattatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgagtcaaaaatctagt 14335827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 11658241 - 11658327
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  11658241 caccgttaccaattatatattgcattttattattcgtatgtcaatgcctttacaataaacccgagcggagcacgggtcaaaaatcta 11658327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 11736862 - 11736938
Alignment:
Q  268 ttatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  11736862 ttatatattgcattttattattcgtatgtcaatccctttacaataaatccgagcggagcacggatcaaaaatctagt 11736938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 44543448 - 44543360
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  44543448 caccgttacctattatatattgcattttattattcgtatgtcaatccatttacaataaacccgagcggagcacgggtcaaaaatctagt 44543360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 12898637 - 12898735
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaaattcttaa 354  Q
    |||||||| | ||||||||||  ||||||||||| | ||||||||||||||||||||||  ||||||||||||||||||||||||||||  ||||||||    
T  12898637 caccgttacctattatatattgtattttattattcgcatgtcaatccctttacaataaacttgagcggagcacgggtcaaaaatctagtttattcttaa 12898735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 20639864 - 20639779
Alignment:
Q  259 cgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||| |||||||||||| |||||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  20639864 cgttaccaattatatattgcattttattattcgtttgtcaatccctttacaataaacccgagcggagcacgggtaaaaaatctagt 20639779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 17370674 - 17370758
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| ||||||||||||  ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  17370674 gttaccaattatatattgtattttattattcgtatgtcaatctctttacaataaatccgagcggagtacgggtcaaaaatctagt 17370758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 12896128 - 12896042
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||||||||| ||||| | |||||||||| ||||||||||||||    
T  12896128 caccgttacctattatatattgcattttattattcgtatgtcaatccctttacgataaacccgagcggagcatgggtcaaaaatcta 12896042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 20640166 - 20640039
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||| ||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||         |||||||||||||||||||||||    
T  20640166 ttgtatattgctgtttcaagagttacatccagagaaggactaattaaagatattgatcactgatgaag---------ataccaatgtaacgtctaatgtc 20640076  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
     ||||  |||||||||||  |||| | ||||||||||    
T  20640075 ttatatgaggaagtattttgcaatttgtgatgaaact 20640039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 28611606 - 28611522
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||||| ||| | |||||||||||||    
T  28611606 gttaccaattatatattgcattttattatttgtatgtcaatccctttacaataaacccaagcggaacactgatcaaaaatctagt 28611522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 8430651 - 8430566
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||| |  ||||||||||| ||||||||||||    
T  8430651 caccgttaccaattatatattgcattttattattcgtatgtcaat-cctttacaataaacccaagcggagcacgagtcaaaaatcta 8430566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 44257056 - 44257140
Alignment:
Q  261 ttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||| |||||||||| |||||||||||| |||| |||||| ||||||||||||| |||||||||||||| | |||||| |||||    
T  44257056 ttatctattatatattgcattttattattcgtatatcaatctctttacaataaatttgagcggagcacggattaaaaatatagta 44257140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 627994 - 628063
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaa 336  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||| || ||||||||| ||||||    
T  627994 attatatattacattttattattcgtatctcaatctctttacaataaatccgaacggagcacgagtcaaa 628063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 29550732 - 29550821
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||| | |||||||| |  ||||||||||| |||||||||||| |||||||||||   ||||||||||| ||||||||||||||||    
T  29550732 caccgttacctattatatactgtattttattattcgtatgtcaatccatttacaataaactcgagcggagcacaggtcaaaaatctagta 29550821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 27351595 - 27351507
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||  ||||||| | | |||  ||||||||||| ||||||||    
T  27351595 caccgttaccaattatatattgcattttattattcgtatgtcaatcccttatcaataaacccgtgcgacgcacgggtcaacaatctagt 27351507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 6348486 - 6348564
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    |||||||||| ||||||||| || |||| |||||||||||||||||||   ||||||||| |||||||||||| |||||    
T  6348486 attatatattgcattttatttttcgtatatcaatccctttacaataaactcgagcggagcgcgggtcaaaaatttagta 6348564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 20709601 - 20709685
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||||| |||||||||||| |||||||||| ||||||| |||||    |||||| ||| |||||||||||||||    
T  20709601 gttaccaattatatattgcattttattattcgtatgtcaattcctttacgataaactcaagcggatcacaggtcaaaaatctagt 20709685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 11131741 - 11131799
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    ||||||||||||||||||||| |||||||||||| || |||||||| ||| ||||||||    
T  11131741 caccgttatcaattatatattgcattttattattcgtttgtcaatctcttaacaataaa 11131799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 19640521 - 19640609
Alignment:
Q  257 accgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||| || ||||||| |||||||| ||| |||| ||||||||||||| ||||| | |||||||| |  | ||||||||||||||    
T  19640521 accgttatctatcatatattgcattttatcattcgtatatcaatccctttactataaacccgagcggagtatagatcaaaaatctagta 19640609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 19839114 - 19839202
Alignment:
Q  257 accgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagta 345  Q
    ||||||||| || ||||||| |||||||| ||| |||| ||||||||||||| ||||| | |||||||| |  | ||||||||||||||    
T  19839114 accgttatctatcatatattgcattttatcattcgtatatcaatccctttactataaacccgagcggagtatagatcaaaaatctagta 19839202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 30556925 - 30556867
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    |||||||| |||||||||||| ||||||||||||| ||| ||||||| || ||||||||    
T  30556925 caccgttaccaattatatattgcattttattatttatatttcaatcctttaacaataaa 30556867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 41995104 - 41995020
Alignment:
Q  259 cgttatcaattatatattacattttattattt-gtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    ||||| |||||||||| | ||||| ||||||  || | |||||||||||| |||||||| |||||||  ||||||||||||||||    
T  41995104 cgttaccaattatatagtgcatttcattattccgtctatcaatccctttataataaatccgagcggaatacgggtcaaaaatcta 41995020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 1199572 - 1199704
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| ||||||||||||||||||||| |||| |||||| |    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  1199572 ttgtatgttgctgtttcaagagttacatccagagaagtactaaaga----tattgatcactgatgaagatggtgaagataccaatgtaatgtctaatgtc 1199667  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||| |||| | ||||||||||    
T  1199668 gtatatgaggaagtatttcgcaatatgtgatgaaact 1199704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 604230 - 604098
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| ||||||||||||||||||||  |||||    | |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||    
T  604230 ttgtatgttgctgtttcaagagttacatccaaagaagg----attaaagatattgatcactgatgaagatggtgaagataccaatgtaacatctaacgtc 604135  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||| |||||| ||||||||||    
T  604134 gtatatgaggaagtatttcgcaatgtgtgatgaaact 604098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 30206524 - 30206610
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  30206524 caccgttaccaattatatattgcattttattatttgtatgtcaatccctttacaataaatttgaacggagcatgggtcaaaaatcta 30206610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 1852247 - 1852379
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    ||||||||||||||||||||||||||||| || |||||||    |||| ||||||| |||| |||||||||||||| |||||||||| || ||||| |||    
T  1852247 ttgtatgttgttgtttcaagagttacatcaagagaaggac----taaagatattgaacactaatgaagatggtgaagataccaatgtgacatctaacgtc 1852342  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  |||||||||||| |||||| ||||||||||    
T  1852343 gtatatgaggaagtatttcgcaatgtgtgatgaaact 1852379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 30437207 - 30437075
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||| | ||||||||||||||||||| ||||||||||| |    |||||| | ||||||||||| ||||| ||||||||||||||||||||||     
T  30437207 ttgtatgttgctatttcaagagttacatccagagaaggactaaaga----tattgaccgctgatgaagatagtgaagataccaatgtaacgtctaatgtt 30437112  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  || |||||||||||||||| ||||||||||    
T  30437111 gtatatgagaaagtatttcacaatgtgtgatgaaact 30437075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 9389501 - 9389591
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagtaa 346  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  9389501 caccgttaccaattatatattgcattttattattcgtatgtcaatccttttataataaatccgagcggagcacgagtcaaaaatctagtaa 9389591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 30436929 - 30436840
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaa-tccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||||||    
T  30436929 caccgttatcaattatatattgcactttattattcgtatgtcaaatccctttacaataaacccgagcggagcacgggtcaaaaatctagt 30436840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 44429596 - 44429730
Alignment:
Q  1 caattgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    ||||||||||||||||||||||||||||||||||   |||     | |||| |||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  44429596 caattgtatgttgttgtttcaagagttacatccaaaaaag-----actaaagatattgatcattgataaagatggtgaagataccaatgtaacgtctaat 44429690  T
Q  101 gtc--gtataaggaagtatttcacaatgtatgatgaaact 138  Q
    |||  |||| | |||||||||| |||||| ||||||||||    
T  44429691 gtcgtgtatgaagaagtatttcgcaatgtgtgatgaaact 44429730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 44434356 - 44434487
Alignment:
Q  4 ttgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtc 103  Q
    |||||||||||| ||||||||||||||||||  |||||     ||||| |||||||||||||||||||||| |||| ||| ||||||||| ||||| |||    
T  44434356 ttgtatgttgttatttcaagagttacatccaaagaagg-----ataaagatattgatcactgatgaagatgatgaagatatcaatgtaacatctaacgtc 44434450  T
Q  104 gtata--aggaagtatttcacaatgtatgatgaaact 138  Q
    |||||  | |||||||||| |||||| ||||||||||    
T  44434451 gtatatgaagaagtatttcgcaatgtgtgatgaaact 44434487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 14683410 - 14683498
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||||||||    
T  14683410 caccgttaccaattatgtattgcattttattattcgtatgtcaatccctttacaataaactcgagcagagcacgggtcaaaaatctagt 14683498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 42046075 - 42046146
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaa 338  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  42046075 attatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcggagcacgggtcaaaaa 42046146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 35618020 - 35618101
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaa 337  Q
    ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||| | |||||||||| |||||||||    
T  35618020 caccgttatcaattatatattgcattttattattcgtatgtcaattcctttacaagaaacccgagcggagcatgggtcaaaa 35618101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 23086384 - 23086468
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||||| |||||||||||  ||||||||||||||||||| |||| | |||||||||| ||||||||||||||||    
T  23086384 gttaccaattatatattgcattttattatccgtatgtcaatccctttacagtaaacccgagcggagcatgggtcaaaaatctagt 23086468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 39921917 - 39921841
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctag 343  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| | ||||  ||||||||||||||||||||    
T  39921917 attatatattgcattttattattcgtatgtcaatccctttacaataaacccgagcaaagcacgggtcaaaaatctag 39921841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 32063187 - 32063305
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||| |||||||||||||||       || ||||| | |||||||||| |||||||||||| |||||| ||||||||||||||||||| || |||    
T  32063187 gtctactatggattatcacatgttatttttt-catcgttacctattatatattgcattttattattcgtatgttaatccctttacaataaatccga-cgg 32063284  T
Q  324 agcacgggtcaaaaatctagt 344  Q
    |||||| ||||||||||||||    
T  32063285 agcacgagtcaaaaatctagt 32063305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 23959985 - 23959900
Alignment:
Q  259 cgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||| |  | ||||||||||||||||||| ||||    
T  23959985 cgttaccaattatatattgcattttattattcgtatgtcaatccctttataataaacccaaacggagcacgggtcaaaaatttagt 23959900  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 38111714 - 38111799
Alignment:
Q  259 cgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||   || | |||||| |||||||||||||||    
T  38111714 cgttaccaattatatattgcattttattattcgtatgtcaatccctttacaataaactcgaacagagcacaggtcaaaaatctagt 38111799  T

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Target: chr8; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 37197380 - 37197296
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatc 340  Q
    |||||||| | |||||||||| |||||||||||| |||| ||||||||||||||||||| | || ||||||| ||||||||||||    
T  37197380 caccgttacctattatatattgcattttattattcgtatatcaatccctttacaataaacccgatcggagcatgggtcaaaaatc 37197296  T

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Target: chr8; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 3990820 - 3990895
Alignment:
Q  269 tatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||||||| ||||||||||||  |||||||| | |||||||||||| | |||||||||||||||||||||||||||    
T  3990820 tatatattgcattttattattcttatgtcaacctctttacaataaacccgagcggagcacgggtcaaaaatctagt 3990895  T

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Target: chr8; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 34948252 - 34948331
Alignment:
Q  265 caattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| | || || ||||||| |||||||| ||||    
T  34948252 caattatatattacattttattattcgtatgtcaatccatttacaataaacccgaacgaagcacggctcaaaaatgtagt 34948331  T

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Target: chr8; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 27853058 - 27852982
Alignment:
Q  268 ttatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    ||||||||| |||||||||||| |||||| |||| ||||||||||||   |||| ||||||||||||||||||||||    
T  27853058 ttatatattgcattttattattcgtatgttaatctctttacaataaactcgagcagagcacgggtcaaaaatctagt 27852982  T

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Target: chr8; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 1851110 - 1851233
Alignment:
Q  13 gttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaatgtcgtata--ag 110  Q
    ||||| |||||||||||||| || |||| |||||| |    |||||||  ||||||||||||||||| |||||||||| || ||||| | ||||||  ||    
T  1851110 gttgtatcaagagttacatcaagagaagaactaaaga----tattgatatctgatgaagatggtgaagataccaatgtgacatctaacgccgtatatgag 1851205  T
Q  111 gaagtatttcacaatgtatgatgaaact 138  Q
    |||||||||| |||||| ||||||||||    
T  1851206 gaagtatttcgcaatgtgtgatgaaact 1851233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 1199849 - 1199935
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    ||||||||||||||  ||||| ||||||||||||  |||||||||| |||||||||||| | |||| ||||||  ||||||||||||    
T  1199849 caccgttatcaattgcatattgcattttattattcatatgtcaatcactttacaataaacccgagcagagcacttgtcaaaaatcta 1199935  T

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Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 603982 - 603876
Alignment:
Q  224 gtctactatagattatcacatgttannnnnnncaccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcgg 323  Q
    ||||||||| ||||||||| |||||       |||||||| |||||||||||| |||||||||||| |||||||||||||||  |||||||   | ||||    
T  603982 gtctactatggattatcacgtgttatttttttcaccgttaccaattatatattgcattttattattcgtatgtcaatcccttagcaataaactcgcgcgg 603883  T
Q  324 agcacgg 330  Q
    |||||||    
T  603882 agcacgg 603876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 44434608 - 44434666
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    |||||||| ||||||||| || |||||||||||| ||||||||||| ||||||||||||    
T  44434608 caccgttaccaattatattttgcattttattattcgtatgtcaatcgctttacaataaa 44434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 34588478 - 34588435
Alignment:
Q  297 caatccctttacaataaatctgagcggagcacgggtcaaaaatc 340  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  34588478 caatccctttacaataaacccgagcggagcacgggtcaaaaatc 34588435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 44433332 - 44433430
Alignment:
Q  1 caattgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    ||||||||||||||||||||||||||||||||||   ||  ||  | |||| ||||| |||| ||||| ||| |||||| ||||||| ||||||||||||    
T  44433332 caattgtatgttgttgtttcaagagttacatcca---aa--acagactaaagatattaatcattgatggaga-ggtgaagataccaaggtaacgtctaat 44433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 13461368 - 13461328
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgt 296  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  13461368 caccgttaccaattatatattgcattttattatttgtatgt 13461328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 3458837 - 3458793
Alignment:
Q  256 caccgttatcaattatatattacattttattatttgtatgtcaat 300  Q
    |||||||| | |||||||||| |||||||||||| ||||||||||    
T  3458837 caccgttacctattatatattgcattttattattcgtatgtcaat 3458793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 849 - 716
Alignment:
Q  1 caattgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||||||| |    |||||||||||||||||||||||||| |||||||||||||||||||     
T  849 caattgtatgttgctgtttcaagagttacatccggagaatgactaaaga----tattgatcactgatgaagatggtgaagataccaatgtaacgtctaac 754  T
Q  101 gtcg--tataaggaagtatttcacaatgtatgatgaaa 136  Q
    ||||  ||||||||||| |||  |||||| ||||||||    
T  753 gtcgtatataaggaagtgttttgcaatgtgtgatgaaa 716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9368 - 9501
Alignment:
Q  1 caattgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||||||| |    |||||||||||||||||||||||||| |||||||||||||||||||     
T  9368 caattgtatgttgctgtttcaagagttacatccggagaatgactaaaga----tattgatcactgatgaagatggtgaagataccaatgtaacgtctaac 9463  T
Q  101 gtcg--tataaggaagtatttcacaatgtatgatgaaa 136  Q
    ||||  ||||||||||| |||  |||||| ||||||||    
T  9464 gtcgtatataaggaagtgttttgcaatgtgtgatgaaa 9501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 29612 - 29479
Alignment:
Q  1 caattgtatgttgttgtttcaagagttacatccagcgaaggactaaataaatatattgatcactgatgaagatggtgaatataccaatgtaacgtctaat 100  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||||||| |    |||||||||||||||||||||||||| |||||||||||||||||||     
T  29612 caattgtatgttgctgtttcaagagttacatccggagaatgactaaaga----tattgatcactgatgaagatggtgaagataccaatgtaacgtctaac 29517  T
Q  101 gtcg--tataaggaagtatttcacaatgtatgatgaaa 136  Q
    ||||  ||||||||||| |||  |||||| ||||||||    
T  29516 gtcgtatataaggaagtgttttgcaatgtgtgatgaaa 29479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 163461 - 163384
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||    
T  163461 attacatattgcattttattattcgtatgtcaatccctttacaataaacccgagtggagcacgggtcaaaaatctagt 163384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 12214 - 12134
Alignment:
Q  259 cgttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaat 339  Q
    |||||||||||| ||||| ||||||||||||  |||||||||| |||||||||||| | ||||||||||||||||||||||    
T  12214 cgttatcaattacatattgcattttattattcatatgtcaatcactttacaataaacccgagcggagcacgggtcaaaaat 12134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 1407 - 1324
Alignment:
Q  270 atatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacggg-tcaaaaatctagtaaattctt 352  Q
    |||||||  ||||||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||    
T  1407 atatattgtattttattattcgtttgtcaatccctttacaataaacccgagcggagcacgggatcaaaaatctagttaattctt 1324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 13672 - 13747
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatcta 342  Q
    |||||||| | ||||||||||| |||||||||||||||||||| |||| | |||| ||||||||||||||||||||    
T  13672 attatatagtgcattttattatctgtatgtcaatccctttacattaaacccgagctgagcacgggtcaaaaatcta 13747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 13440 - 13524
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatctagt 344  Q
    |||| |||||||||||| |||||||||||| |||||||||| ||||||| |||||    |||||| ||| |||||||||||||||    
T  13440 gttaccaattatatattgcattttattattcgtatgtcaattcctttacgataaactcaagcggatcacaggtcaaaaatctagt 13524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 12054 - 12000
Alignment:
Q  260 gttatcaattatatattacattttattatttgtatgtcaatccctttacaataaa 314  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||| | ||||||    
T  12054 gttatcaattatatattgcattttattattcatatgtcaatcccttaataataaa 12000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 16594 - 16666
Alignment:
Q  267 attatatattacattttattatttgtatgtcaatccctttacaataaatctgagcggagcacgggtcaaaaatc 340  Q
    |||||||||| |||||||||||| ||||||||||   | ||||||||| ||||||  || ||||||||||||||    
T  16594 attatatattgcattttattattcgtatgtcaattattgtacaataaacctgagcaaag-acgggtcaaaaatc 16666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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