View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_6 (Length: 448)
Name: NF7790_low_6
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_6 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 8351275 - 8350894
Alignment:
| Q |
19 |
gaaagaagttgagtccttacaaagaataattgttattgaagcatcccc-gtttacttcacttttatattatttaataaatctggcactag-catagtcac |
116 |
Q |
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| T |
8351275 |
gaaagaagttgagtccttacaaagaataattgttattgaagcatcccccgttcacttcacttttatattatttaataaatctggtaataggcatagtcac |
8351176 |
T |
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| Q |
117 |
aatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacatcgttgtagtgtatttcttctctaa |
216 |
Q |
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| T |
8351175 |
aatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgatatcgttgtagtgtatttcttctctaa |
8351076 |
T |
|
| Q |
217 |
tgagttgataggcgaataagaaacttatcagcaatcattcttggggtagatatgaaatttgaaactaagggaatacctatgtttcaaatttatcatctat |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
8351075 |
tgagttgataggcgaatgagaaacttatcagcaatcattcttgtggtagatatgaaatttgaaactaagggaatacctatgtttcaaatttattatttat |
8350976 |
T |
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| Q |
317 |
cactactgtttgttgataacttttctaatg-ccttgtgataaaaaagaaaaattacttcaaagaccttttcggaacaaaggc |
397 |
Q |
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| T |
8350975 |
cactactgtttgttgataacttttctaatgcccttgtgataaaaaagaaaaattacttcaaagaccttttcggaacaaaggc |
8350894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 8412493 - 8412344
Alignment:
| Q |
85 |
ttatttaataaatctggcactagcatagtcacaa--------tagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataa |
176 |
Q |
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| T |
8412493 |
ttatttaataaatctcgcaatagcatagtcacaaactcacagtaaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataa |
8412394 |
T |
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| Q |
177 |
aaacagcgcatgacatcgttgtagtgtatttcttctctaatgagttgatagg |
228 |
Q |
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| T |
8412393 |
aagcaacgcat-atatcgttgtagtgtattac-tctctaatgagatgatagg |
8412344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 8451809 - 8451736
Alignment:
| Q |
87 |
atttaataaatctggcactagcatagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagag |
160 |
Q |
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| T |
8451809 |
atttaataaatctggcaatagcatactcacagtagacaaaaagtcccacatcaaaaactttcaataatagagag |
8451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 8479328 - 8479415
Alignment:
| Q |
105 |
tagcatagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacat |
192 |
Q |
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| T |
8479328 |
tagcatattcacaatagacaaaaagtcccacttcgaacactttgtacaatataaagagcaggtttcctataaaagcagcgtatgacat |
8479415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 381
Target Start/End: Complemental strand, 8412300 - 8412216
Alignment:
| Q |
298 |
tttcaaatttatcatctatcac-tactgtttgttgataacttttctaatgccttgtgataaaaaa-gaaaaattacttcaaagacc |
381 |
Q |
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| T |
8412300 |
tttcaaatttaccattaatcacgtattgtttgtttataacttctttaatgcct-gtgataaaaaaagaaaaattacttcaaagacc |
8412216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 8358903 - 8358837
Alignment:
| Q |
126 |
aaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacatc |
193 |
Q |
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| T |
8358903 |
aaagtcccacatcgaaaa-tttctacaatataaagagtaagttggctataaaagcagcgcatggcatc |
8358837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 8426866 - 8426785
Alignment:
| Q |
108 |
catagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgaca |
191 |
Q |
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| T |
8426866 |
catagtcacaatagatacaaagccccacatcgaaaactttttaaattataga--gtaagtttcctattaaagcagcgcatgaca |
8426785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 8479519 - 8479574
Alignment:
| Q |
323 |
tgtttgttgataacttttctaatgccttgtgataaaaaagaaaaattacttcaaaga |
379 |
Q |
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| T |
8479519 |
tgtttgtttataagttctctaattcctt-tgataaaaatgaaaaattacttcaaaga |
8479574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 10101 - 10137
Alignment:
| Q |
202 |
gtatttcttctctaatgagttgataggcgaataagaa |
238 |
Q |
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| T |
10101 |
gtattacttctctaatgagttgataggcgaattagaa |
10137 |
T |
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