View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7790_low_7 (Length: 444)
Name: NF7790_low_7
Description: NF7790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7790_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 54276578 - 54276996
Alignment:
| Q |
1 |
cggggaggcgaagataggcctaaagcgagacggtatcgaggatctgagtgggcgtgttcatctacttccctgctgcatcaagcacgatggtcccactgaa |
100 |
Q |
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| T |
54276578 |
cggggaggcgaagatagacctaaagcgagacggtatcgaggatctgagtgggcgtgttcatctacttccctgctgcatcaagcacgatggtcccaccgaa |
54276677 |
T |
|
| Q |
101 |
gtctctcagtatttcaaacctaaacctaccggcgtcgtcggagaagacggtttaccattacagcaatcgcattttcgaggaaggttgctcgaaggaacta |
200 |
Q |
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| T |
54276678 |
gtctctcagtatttcaaacctaaacctaccggcgtcgtcggagaagacggtttaccattacagcaatcgcattttcgaggaaggttgctcgaaggaacta |
54276777 |
T |
|
| Q |
201 |
ctctccctcttcctcataactactctggtaaccaaacttgttttc---tcttcttatctctttctttctcattgtgatgatgactcatgattgctatgct |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54276778 |
ctctccctcttcctcataactactctggtaaccaaacttgttttctcttcttcttatctctttctttctcattgtgatgatgactcatgattgctatgct |
54276877 |
T |
|
| Q |
298 |
ctgtaggttttgttttgggaaagaaaaattcggccaaaaaatccgatgaaagctctaattcgtgggagactagtgcgacgtttaatgatatcacgtattg |
397 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
54276878 |
ctgtaggttttgttttgggaaagaaaaattcg------------gttgaaagctctaattcgtgggagactagtgtgacctttaatgatatcacgtattg |
54276965 |
T |
|
| Q |
398 |
gaaccacgacagcgttccttcaaacaatgat |
428 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
54276966 |
gaaccacgacagcgttccttcaaacaatgat |
54276996 |
T |
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