View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7791_high_1 (Length: 677)

Name: NF7791_high_1
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7791_high_1
NF7791_high_1
[»] chr8 (1 HSPs)
chr8 (16-659)||(4327732-4328365)


Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 16 - 659
Target Start/End: Original strand, 4327732 - 4328365
Alignment:
Q  16 tcaatattgcgagagattttcacaaaagaaagttcaaaaattcaataaaaatttggttttgggggaaagcaatttgattttactttgaatcagtttggat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4327732 tcaatattgcgagagattttcacaaaagaaagttcaaaaattcaataaaaatttggttttgggtgaaagcaatttgattttactttgaatcagtttggat 4327831  T
Q  116 aagaatactcttattcaacattaattctacaatttcctccaaaactgcaggtatttgattccgactattttttaaaaactacttatattcattatttaat 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4327832 aagaatactcttactcaacattaattctacaatttcctccaaaactgcaggtatttgattccgactatttcttaaaaactacttatattcattatttaat 4327931  T
Q  216 tttgtttggcaaactaaaaatagatcaaaataatataacctattgtttttgtggctcttgaattcacttttaactgannnnnnnnaatattgtaactaga 315  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  4327932 tttgtttggtaaactaaaaatagatcaaaataatataacctattgtttttgtggctcttgaattcacttttaactgattttttttaatattgtaactaga 4328031  T
Q  316 tacacaagaacccacaaccctaaattcataagaatcgacaacccttcgtcgcctctatccccgtacctcccttatccatagtcccaacacgatgtagcat 415  Q
    |||||||||||||||          ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  4328032 tacacaagaacccac----------tcataagaatcgacaacccttcgtcgcctctgtccccctacctcccttatccatagtcccaacacgatgtagcat 4328121  T
Q  416 tgatggtggtgatgctcacaatccttcacaacgacaccacctctaaacccctcttgaggtagcaaaccctgggaatttctctggttgtttgatagatatg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328122 tgatggtggtgatgctcacaatccttcacaacgacaccacctctaaacccctcttgaggtagcaaaccctgggaatttctctggttgtttgatagatatg 4328221  T
Q  516 ggttttggtttggatcgtgttttattcgtcgtagtcaatttgaatctcttagatcttggtttctgctcaaaccttgcatgggctgcctaaatttccacta 615  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4328222 ggttttggtttggatcgtgttttattcgtcgtagtcaatttgagtctcttagatcttggtttctgctcaaaccttgcatgggctgccaaaatttccacta 4328321  T
Q  616 gcaaattcatgtccccgacatgttctgtgttactattcgtctct 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4328322 gcaaattcatgtccccgacatgttctgtgttactattcgtctct 4328365  T

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