View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_high_15 (Length: 288)
Name: NF7791_high_15
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 29022983 - 29022799
Alignment:
| Q |
92 |
tttttctcagtttctgcatattccttccatttctccataaccttcttcactgtttctacacacttcctcatctctcaatacgcagctgcaatttcttcct |
191 |
Q |
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|||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29022983 |
tttttctcagttgctacatatcccttccatttctccacaaccttcttcactgtttctacacacttcctcatctctcaatacgcagctgctatttcttcct |
29022884 |
T |
|
| Q |
192 |
ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttg |
276 |
Q |
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| T |
29022883 |
ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttg |
29022799 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 80 - 275
Target Start/End: Complemental strand, 23358010 - 23357815
Alignment:
| Q |
80 |
ctaccacatttctttttctcagtttctgcatattccttccatttctccataaccttcttcactgtttctacacacttcctcatctctcaatacgcagctg |
179 |
Q |
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||||||| |||| |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || || |
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| T |
23358010 |
ctaccacgcttctgtttctcagtttcggcatatcccttccatttctccacaaccttcttcactgtttctacacacttcctcatctcttaatacacaattg |
23357911 |
T |
|
| Q |
180 |
caatttcttcctctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaactt |
275 |
Q |
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| T |
23357910 |
caatttcttcctctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaactt |
23357815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 41740945 - 41741141
Alignment:
| Q |
80 |
ctaccacatttctttttctcagtttctgcatattccttccatttctccataaccttcttcactgtttctacacacttcctcatctctcaatacgcagctg |
179 |
Q |
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|||||||| |||||||||| | ||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||| |
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| T |
41740945 |
ctaccacacttctttttcttaatttctgcatatcccttcaatttctccacaaccttcttcacggtttctacacacttcctcatctctcaatacacaactg |
41741044 |
T |
|
| Q |
180 |
caatttcttcctctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttg |
276 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41741045 |
caatttcttcctctatctcacaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcgacttg |
41741141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 80 - 276
Target Start/End: Original strand, 292067 - 292268
Alignment:
| Q |
80 |
ctaccacatttctttttctcagttt-----ctgcatattccttccatttctccataaccttcttcactgtttctacacacttcctcatctctcaatacgc |
174 |
Q |
| |
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|||||||| |||||||||||||| | |||||||| ||||||||||||||| || ||||||||| |||||||||||||| ||||||||||||||| | |
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| T |
292067 |
ctaccacacttctttttctcagtatagtctctgcatatcccttccatttctccacaaacttcttcacggtttctacacactttctcatctctcaatacac |
292166 |
T |
|
| Q |
175 |
agctgcaatttcttcctctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaact |
274 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
292167 |
agttgcaatttcttcctctatctcgcaataatttcattccattctttctaccatccttattaaataaactgaaagcttatttgtgcaatgaccttcaact |
292266 |
T |
|
| Q |
275 |
tg |
276 |
Q |
| |
|
|| |
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|
| T |
292267 |
tg |
292268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 88 - 276
Target Start/End: Original strand, 28987659 - 28987850
Alignment:
| Q |
88 |
tttctttttctcagtttctgcatattccttccatttctccataaccttcttcactgtttctacacacttcctcatctctcaatacgcagctgcaatttct |
187 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||| |
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| T |
28987659 |
tttctttttctcagtttctgtgtttcccttccatttctccacaactttcttcactgtttctacacccttcctcatctcttaatacacagttgcaatttct |
28987758 |
T |
|
| Q |
188 |
---tcctctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttg |
276 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
28987759 |
tcttcctctatctctcaataatttcattccattctttctaccatccttattgaataagctgaaagcttccttgtgcaatgaccttcaacttg |
28987850 |
T |
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