View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_high_17 (Length: 241)
Name: NF7791_high_17
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 37 - 224
Target Start/End: Original strand, 31574326 - 31574514
Alignment:
| Q |
37 |
ttatttgtacataacatcaaatcctcctttacctaatttctcttgaaaggaaattagcatatcgatatatattgcttatttggcattgaca-aattatat |
135 |
Q |
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| T |
31574326 |
ttatttgtacataacatcaaatcctcctttacctaatttctcttgaaaggaaattagcatatcgatatatattgcttatttggcattgacacaattatat |
31574425 |
T |
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| Q |
136 |
tttcaatgaaaccctgcactttaaaacaagcttacctgagaggaaaaattatttgaactaaattatttagttgttaatatgtataatat |
224 |
Q |
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| T |
31574426 |
tttcaatgaaatcctgcactttaaaacaagcttacctgagaggaaaaaatatttgaactaaattatttagttgttaatatgtataatat |
31574514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31574253 - 31574294
Alignment:
| Q |
1 |
ttatgaaatcttgtccttcttcctttcaatcatttattattt |
42 |
Q |
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| T |
31574253 |
ttatgaaatcttgtccttcttcctttcaatcatttattattt |
31574294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 32352136 - 32352091
Alignment:
| Q |
179 |
aaaaattatttgaactaaattatttagttgttaatatgtataatat |
224 |
Q |
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| T |
32352136 |
aaaaaatatttgaactaaattattaggttgttaatatgtataatat |
32352091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 32355734 - 32355704
Alignment:
| Q |
56 |
aatcctcctttacctaatttctcttgaaagg |
86 |
Q |
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| T |
32355734 |
aatcctcctttacctaatttctcttgaaagg |
32355704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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