View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_high_20 (Length: 229)
Name: NF7791_high_20
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29817494 - 29817283
Alignment:
| Q |
1 |
gatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacctaatggtaagcagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817494 |
gatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacctaatggtaagcagct |
29817395 |
T |
|
| Q |
101 |
gatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattccgcgacaagattctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817394 |
gatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattccgcgacaagattctc |
29817295 |
T |
|
| Q |
201 |
caagatgattat |
212 |
Q |
| |
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|||||||||||| |
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| T |
29817294 |
caagatgattat |
29817283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29825752 - 29825547
Alignment:
| Q |
1 |
gatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacctaatggtaagcagct |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29825752 |
gatttgcattgtgtttcctattagtgagttatgccgtcccacctgaattgtgcaatcatgagattgattgttatttgttttcgcctaatggtaagcaa-- |
29825655 |
T |
|
| Q |
101 |
gatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattccgcgacaagattctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29825654 |
----ttgatcagcaccaggagattacctcctatggatccctgttatcctcatctttatattctctacttgtccattgaacaattccgcgacaaaattctc |
29825559 |
T |
|
| Q |
201 |
caagatgattat |
212 |
Q |
| |
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||||||||||| |
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| T |
29825558 |
gaagatgattat |
29825547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29575120 - 29575324
Alignment:
| Q |
1 |
gatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacctaatggtaagcagct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||||||| |||| || |||||||||||||||||||||||| || ||||||||||| || |
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| T |
29575120 |
gatttgcattgtgtttcctattagtgagttatgctgacccacctgaattgtgtaagcatgagattgattgttatttgtttgcatctaatggtaagaag-- |
29575217 |
T |
|
| Q |
101 |
gatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattccgcgacaagattctc |
200 |
Q |
| |
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|| |||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||||| || |||| ||||| | |||||| |
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| T |
29575218 |
----ttaatcaccaccaggagtttacctcctatggacccatgttatcctcatctttatattctctacatgtccatcgatgaatttcgcgatgaaattctc |
29575313 |
T |
|
| Q |
201 |
caagatgatta |
211 |
Q |
| |
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|||||||||| |
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|
| T |
29575314 |
aaagatgatta |
29575324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 29595244 - 29595077
Alignment:
| Q |
38 |
cccacctgaactgtgcaatcatgagattgattgttatttgttttcacctaatggtaagcagctgatcttgatcagcaccaggagattacctcctatggat |
137 |
Q |
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||||||||| |||||||| |||||||||||||||| ||||||||| ||||| ||||| | || ||| |||||| | ||||||||||||| || |
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| T |
29595244 |
cccacctgagctgtgcaaccatgagattgattgttgcttgttttcaagtaatgctaagctg------tttgtcaccaccagaacattacctcctatgaat |
29595151 |
T |
|
| Q |
138 |
ccatgttatcctcacctttatattctctacttgtccattgaacaattccgcgacaagattctccaagatgatta |
211 |
Q |
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|||| | ||||||||||||||||||||||||||||||||| ||||| ||||| | |||||| |||||||||| |
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| T |
29595150 |
ccatatcttcctcacctttatattctctacttgtccattgatcaatttcgcgatagaattctcaaagatgatta |
29595077 |
T |
|
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