View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_high_5 (Length: 443)
Name: NF7791_high_5
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 52609138 - 52609553
Alignment:
| Q |
14 |
agacattccaatactcaaagtcaatgatatctcaaggtattttaaggcttttctcgaaatgagaatgtgcacatgattttgcagtggtttattctatttt |
113 |
Q |
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| T |
52609138 |
agacattccaatactcaaagtcaatgatatctcaaggtgttttaaggcttttctcgaaatgagaatgtgcacatgattttgcagtggattattctatttt |
52609237 |
T |
|
| Q |
114 |
tagattaattttcagttcgttcgttgcattagtacgggcttttagacggctgcacactattgcctctgagagccttatttagtgtttcacggctctttac |
213 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52609238 |
tagatt----ttcagttcgttcgttgcattagtacgtgcttttagacggctgcacactattgcctctgagagccttatttagtgtttcacggctctttac |
52609333 |
T |
|
| Q |
214 |
atatataagagatccacgactgcatttccgcacctcattttaccttagcccacaagtcattgtcttgttctttgaggcgaagacttaaagattctagtgc |
313 |
Q |
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| T |
52609334 |
atatataagagatccacgactgcattttcgcgcctcattttaccctagcccccaagtcattgtcttgttctttgaggcgaagacttaaagattctagtgc |
52609433 |
T |
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| Q |
314 |
tctaacatcgacgattaacttcaggcagttatttttgttgggcttgtgctccaagggatgatcacgtttggt------gtcccaattttgtctttaccca |
407 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |
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| T |
52609434 |
tctaacatcgacgattaacttcaggcggttatttttgttgggcttgtgctccaagtgatgatcacgtttggtgaaagagtcccaattttgtgtttaccca |
52609533 |
T |
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| Q |
408 |
tatgagtacaatgtgattag |
427 |
Q |
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|||||||||||||||||||| |
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| T |
52609534 |
tatgagtacaatgtgattag |
52609553 |
T |
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