View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7791_low_12 (Length: 353)

Name: NF7791_low_12
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7791_low_12
NF7791_low_12
[»] chr3 (17 HSPs)
chr3 (4-191)||(35612980-35613169)
chr3 (4-191)||(50834050-50834238)
chr3 (4-191)||(50841615-50841803)
chr3 (4-191)||(22515682-22515872)
chr3 (30-186)||(25313412-25313569)
chr3 (4-168)||(9663868-9664030)
chr3 (8-201)||(20922739-20922934)
chr3 (4-168)||(48905596-48905761)
chr3 (202-334)||(44968468-44968599)
chr3 (4-191)||(54748034-54748221)
chr3 (4-186)||(46320482-46320665)
chr3 (4-191)||(23026246-23026436)
chr3 (4-183)||(49794919-49795098)
chr3 (4-168)||(26848122-26848287)
chr3 (49-191)||(25095993-25096136)
chr3 (53-137)||(33280330-33280416)
chr3 (62-133)||(32619323-32619396)
[»] chr1 (23 HSPs)
chr1 (4-201)||(40988030-40988228)
chr1 (4-186)||(16130474-16130659)
chr1 (4-186)||(16129920-16130109)
chr1 (4-191)||(27654649-27654835)
chr1 (4-191)||(34546693-34546880)
chr1 (12-186)||(1553764-1553939)
chr1 (42-191)||(9411771-9411922)
chr1 (4-194)||(36834276-36834461)
chr1 (4-191)||(5800400-5800586)
chr1 (4-191)||(27332901-27333088)
chr1 (4-151)||(27846418-27846567)
chr1 (4-191)||(4813713-4813902)
chr1 (4-162)||(35050267-35050426)
chr1 (4-168)||(30222758-30222923)
chr1 (4-141)||(45192535-45192673)
chr1 (48-168)||(23933323-23933446)
chr1 (45-193)||(11907918-11908067)
chr1 (4-148)||(13879011-13879161)
chr1 (111-191)||(35121214-35121293)
chr1 (4-90)||(35121293-35121378)
chr1 (90-139)||(26961165-26961214)
chr1 (88-185)||(38858944-38859036)
chr1 (49-110)||(35428426-35428491)
[»] chr4 (11 HSPs)
chr4 (4-185)||(27627802-27627983)
chr4 (4-191)||(782836-783024)
chr4 (4-201)||(36187352-36187550)
chr4 (4-191)||(26877206-26877396)
chr4 (4-191)||(30537593-30537780)
chr4 (4-191)||(43034092-43034279)
chr4 (4-191)||(3067771-3067957)
chr4 (10-191)||(50150286-50150466)
chr4 (48-191)||(25934384-25934527)
chr4 (4-164)||(33313300-33313462)
chr4 (48-143)||(56551480-56551573)
[»] chr2 (17 HSPs)
chr2 (4-191)||(39778612-39778802)
chr2 (4-191)||(10728255-10728443)
chr2 (4-191)||(10700186-10700374)
chr2 (4-191)||(25186981-25187169)
chr2 (4-191)||(28831001-28831188)
chr2 (51-201)||(19926795-19926945)
chr2 (4-191)||(36191536-36191725)
chr2 (4-191)||(11964194-11964380)
chr2 (4-191)||(21345043-21345228)
chr2 (48-168)||(7105619-7105741)
chr2 (4-191)||(13693492-13693679)
chr2 (4-191)||(42993768-42993955)
chr2 (4-168)||(10448784-10448949)
chr2 (48-168)||(41435614-41435736)
chr2 (51-191)||(22066384-22066525)
chr2 (105-186)||(41462714-41462795)
chr2 (45-123)||(16621977-16622055)
[»] chr6 (3 HSPs)
chr6 (4-186)||(1365693-1365877)
chr6 (4-191)||(7243378-7243566)
chr6 (4-191)||(24337978-24338162)
[»] chr7 (10 HSPs)
chr7 (4-182)||(23319938-23320117)
chr7 (4-201)||(48390282-48390480)
chr7 (1-197)||(18674541-18674737)
chr7 (51-201)||(48394171-48394321)
chr7 (4-168)||(7568141-7568306)
chr7 (4-191)||(24989757-24989944)
chr7 (7-169)||(41850979-41851143)
chr7 (60-191)||(8417702-8417834)
chr7 (4-168)||(45062521-45062686)
chr7 (85-139)||(965166-965222)
[»] chr8 (12 HSPs)
chr8 (4-191)||(32305751-32305939)
chr8 (4-191)||(35634753-35634941)
chr8 (4-191)||(8669777-8669964)
chr8 (11-185)||(8106943-8107117)
chr8 (4-185)||(29226326-29226506)
chr8 (4-191)||(13882129-13882315)
chr8 (4-196)||(42569940-42570135)
chr8 (4-185)||(37533816-37533998)
chr8 (45-185)||(17855397-17855539)
chr8 (63-158)||(36741715-36741815)
chr8 (4-68)||(45177566-45177630)
chr8 (90-137)||(27419874-27419921)
[»] chr5 (9 HSPs)
chr5 (4-191)||(24868510-24868698)
chr5 (4-191)||(40385196-40385387)
chr5 (4-197)||(3097509-3097706)
chr5 (10-191)||(33314372-33314553)
chr5 (42-191)||(21262897-21263047)
chr5 (4-191)||(41174622-41174810)
chr5 (3-150)||(4237936-4238086)
chr5 (6-186)||(2934853-2935034)
chr5 (4-86)||(4238147-4238227)
[»] scaffold0067 (1 HSPs)
scaffold0067 (4-182)||(6755-6936)
[»] scaffold0057 (2 HSPs)
scaffold0057 (4-181)||(30463-30641)
scaffold0057 (52-191)||(30839-30969)
[»] scaffold0008 (1 HSPs)
scaffold0008 (4-186)||(258287-258461)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 35612980 - 35613169
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  35612980 atagttatcttcatttaatacacctctacatttaaaaaaaattccatgaatacccctaaattaattactctttattccaccaacttatttacttttaata 35613079  T
Q  104 t--tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  35613080 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaa 35613169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 50834238 - 50834050
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||| | | |||||||||||| |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  50834238 atagttatcttcatttaatatatctctacatttaaaaaaaat-ccatgaatacccttaaattaattactctttattccaccaacttacttacttttaata 50834140  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  50834139 ttctctctcataataagtaagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaa 50834050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 50841615 - 50841803
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||| | | |||||||||||| |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  50841615 atagttatcttcatttaatatatctctacatttaaaaaaaat-ccatgaatacccttaaattaattactctttattccaccaacttacttacttttaata 50841713  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  50841714 ttctctctcataataagtaagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaa 50841803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 22515872 - 22515682
Alignment:
Q  4 atagttatcttcatttaatacaccac--tacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaa 101  Q
    |||||||||||||||||||||||| |  ||||||||||| ||||||||| ||||  | |||||||||||||||||| |||||||||||||||||||||||    
T  22515872 atagttatcttcatttaatacacctcaatacatttaaaa-aaattccataaatattcttaaattaattactctttattccaccaacttacttacttttaa 22515774  T
Q  102 tattctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  22515773 tattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaggaccaaaa 22515682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 25313569 - 25313412
Alignment:
Q  30 tacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctc--ataataaataaggacac 127  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||||||| |||    
T  25313569 tacatttaaaa-aaattctatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcac 25313471  T
Q  128 aaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25313470 aaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggac 25313412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 9663868 - 9664030
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| ||||||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9663868 atagtcatcttcatttaatacatttctacatttaaaa-aaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaata 9663966  T
Q  104 ttctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 168  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  9663967 ttctctcataataaataagggcacaaatgaaatttaccttcaaacat-cttgaaacttggtcaat 9664030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 20922739 - 20922934
Alignment:
Q  8 ttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatat--t 105  Q
    |||||||||||||||||||| |||||||||||| ||| || ||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||  |    
T  20922739 ttatcttcatttaatacacctctacatttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaacttacttacttttaatattct 20922838  T
Q  106 ctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaataaaattcac 201  Q
    |||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| || |||| ||| |||||    
T  20922839 ctctcataataaataagagcacaaatgaaatttagcttcaagaatacttgaaacttggtcaatatttcttataaaaagaaccaaaaaaaatttcac 20922934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 48905596 - 48905761
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| ||||||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48905596 atagtcatcttcatttaatacatttctacatttaaaa-aaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaata 48905694  T
Q  104 t--tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 168  Q
    |  ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  48905695 ttctctctcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttggtcaat 48905761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 202 - 334
Target Start/End: Original strand, 44968468 - 44968599
Alignment:
Q  202 aaaccggagtattttttgttgtcgttgaaaggacacataactcatctatatttttcccgagaggagaattgctccgtaaacaacaagcatcaccatttct 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  44968468 aaaccggagtattttttgttgtcgttgaaaggacacataactcatctatatttttcccca-aggagaattgctccgtaaacaacaagcatcaccatttct 44968566  T
Q  302 tgaacaaattcctagagaaccactcccaccccc 334  Q
    |||||| |||| |||||||||||||||||||||    
T  44968567 tgaacatattcgtagagaaccactcccaccccc 44968599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 54748221 - 54748034
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||  |||||||||||| |||||  |||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||    
T  54748221 atagttatcttcatttaatacacttctacatttaaaa-aaattatatgaatacccttaaattaattactctttattccatcaatttacttacttttaata 54748123  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||| ||||    
T  54748122 ttctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccaaaa 54748034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 46320665 - 46320482
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| || ||||||||||||||| ||| |||||| | || |||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  46320665 atagtaatattcatttaatacacctctatatttaaga-aacttccattaacacccctaaattaattactctttatttcaccaacttacttacttttaata 46320567  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
    |||||||  |||||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  46320566 ttctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggac 46320482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 23026246 - 23026436
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattc-catgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    |||||||||||||||||||||| | |||||||||||| |||    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  23026246 atagttatcttcatttaatacatctctacatttaaaaaaaaaaatcatgaatgcccctaaattaattactctttattccaccaacttacttacttttaat 23026345  T
Q  103 at--tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||  ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||  ||||||||||| ||||||| ||| ||||    
T  23026346 attctctctcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaattttatcaatatttcttataaaaatgaccaaaa 23026436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 49794919 - 49795098
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||| ||||||||||      ||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  49794919 atagttatcttcatttaatacacctctacatttaattttttttc-atgaataccccttaattaattactctttattccaccaacttacttacttttaata 49795017  T
Q  104 --ttctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaag 183  Q
      |||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  49795018 ttttctctcataataaataagagtacaaatgaaatttagcttc-aacatacttgaaacttgatcaatatttcttataaaaag 49795098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 26848122 - 26848287
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  ||||| |||||| |||||| ||||| |||| |||||||||||||||||| |||| ||||||||||||||||||||    
T  26848122 atagtcatcttcatttaatacacttctacagttaaaa-aaattctatgaacacccttaaattaattactctttattccatcaacttacttacttttaata 26848220  T
Q  104 t--tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 168  Q
    |  ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  26848221 ttctctctcataatcaataagggcacaaaagaaatttagcttcaaacatacttgaaacttgatcaat 26848287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 25095993 - 25096136
Alignment:
Q  49 atgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctc--tcataataaataaggacacaaatgaaatttagcttcaa 146  Q
    |||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||    
T  25095993 atgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaa 25096092  T
Q  147 acatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||||||| ||| |||||  |||| ||||||||||| ||||    
T  25096093 acatacttgaaatttgatcaat-cttcttataaaaaggaccaaaa 25096136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 33280330 - 33280416
Alignment:
Q  53 atacccctaaattaattactctttactccaccaacttacttacttttaatattctctca--taataaataaggacacaaatgaaatt 137  Q
    |||| |||| ||||| ||||||| | ||||  |||  |||||||||||||||||||||   ||||||||||| ||||||||||||||    
T  33280330 atactcctatattaactactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 32619396 - 32619323
Alignment:
Q  62 aattaattactctttactccaccaacttacttacttttaatat--tctctcataataaataaggacacaaatga 133  Q
    |||||||||||||| ||||||  |||| |||||||||| ||||  |||||| |||||||||| ||||| |||||    
T  32619396 aattaattactcttaactccaataactaacttacttttgatattgtctctcgtaataaataaagacacgaatga 32619323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 40988030 - 40988228
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  40988030 atagttatcttcatttaatacacctctacatttaaaaaaaattcaatgaatacccctaaattaattactctttattccgccaacttacttacttttaata 40988129  T
Q  104 ttctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaagga-caaaaataaaattcac 201  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||    
T  40988130 ttctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccaaaaaaaaaattcac 40988228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 16130474 - 16130659
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaat-tccatgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    |||||||||||||||||||||||| |||||||||||| |||  ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  16130474 atagttatcttcatttaatacacctctacatttaaaaaaaaaatccatgaatacccttaaattaattactttttattccaccaacttacttacttttaat 16130573  T
Q  103 attctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
    ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16130574 attctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggac 16130659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 16129920 - 16130109
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaat-----tccatgaatacccctaaattaattactctttactccaccaacttacttacttt 98  Q
    ||||||||||||||||||||||||  ||||||||||| |||      ||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16129920 atagttatcttcatttaatacacctttacatttaaaaaaaaaaaaaatccatgaatacccctaaattaattactttttattccaccaacttacttacttt 16130019  T
Q  99 taatattctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16130020 taatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggac 16130109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 27654835 - 27654649
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||| ||| |||||| | ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27654835 atagtaatcttcatttaatacacctctatatttaaga-aaattccattaaaacccctaaattaattactctttattccaccaacttacttacttttaata 27654737  T
Q  104 ttctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||| ||||||||||| ||||||||||| ||||    
T  27654736 ttctctcataataaataagggcacaaatgaaatttaacttcaaagatacttaaaacttgatcaatatttcttataaaaaggaccaaaa 27654649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 34546880 - 34546693
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaat-tccatgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    ||||||||||||||||||| ||||  ||||||||||| |||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34546880 atagttatcttcatttaatgcacctttacatttaaaaaaaaaattcatgaatacccctaaattaattactctttattccaccaacttacttacttttaat 34546781  T
Q  103 attctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||| ||||||||||||||||| || |||||||| |||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||||    
T  34546780 attttctcataataaataagggcagaaatgaaa-ttagcttcaaacatacttaaaacttgatcaatattttttataaaaaagacaaaaa 34546693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 1553939 - 1553764
Alignment:
Q  12 cttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctc- 110  Q
    |||||||||||||||  |||||||||||| |||||| || ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  1553939 cttcatttaatacacttctacatttaaaa-aaattctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctct 1553841  T
Q  111 -ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
     ||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||    
T  1553840 cataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatacttcttataaaaaggac 1553764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 9411922 - 9411771
Alignment:
Q  42 aaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctc--ataataaataaggacacaaatgaaattta 139  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| ||||| |||||||||    
T  9411922 aaattccattaacacccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaattta 9411823  T
Q  140 gcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
     ||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  9411822 acttcaaatatacttgaaacttggtcaatatttcttataaaaaggaccaaaa 9411771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 36834461 - 36834276
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| ||||| |||||||||||  ||||||||||||  |||| ||||||||||  |||||||||||||||||| |||||||||||||||||||||||||    
T  36834461 atagtcatctttatttaatacacttctacatttaaaa--aatttcatgaatacc--taaattaattactctttattccaccaacttacttacttttaata 36834366  T
Q  104 ttctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaataa 194  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||| ||  ||||| ||||| |||||||| ||||||||||    
T  36834365 ttctcttataataaataagggtacaaatgaaatttagcttcaaacatacttgaaatttaatcaat-tttcttataaaaagaacaaaaataa 36834276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 5800400 - 5800586
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  ||| ||| |||| |||||| ||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||     
T  5800400 atagtcatcttcatttaatacacttctatattaaaaa-aaattc-atgaatacccctaaattaatttctctttattccactaacttatttacttttaatt 5800497  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||| ||||    
T  5800498 ttctctctcataataaataaggacacaaatgaaatttatcttcaaacatacttgaaacttggtcaat-cttcttataaaaaggaccaaaa 5800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 27332901 - 27333088
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  ||| |||||||| |||||| || ||||||| |||||||||||||||||| ||||  |||||||||||||||||||    
T  27332901 atagtcatcttcatttaatacacttctatatttaaaa-aaattctataaatacccttaaattaattactctttattccattaacttacttacttttaata 27332999  T
Q  104 tt--ctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||  |||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||||||| ||||    
T  27333000 ttttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaat-cttcttataaaaaggaccaaaa 27333088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 27846567 - 27846418
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||||||| || ||||||||||||| | || |||||||||||||||||||||||||    
T  27846567 atagttatcttcatttaatacacttctacatttaaaaacaattccatgaatatccttaaattaattactatctattccaccaacttacttacttttaata 27846468  T
Q  104 t--tctctcataataaataaggacacaaatgaaatttagcttcaaacata 151  Q
    |  |||||||||||||||||||  |||||||||||||| |||||||||||    
T  27846467 ttatctctcataataaataagggtacaaatgaaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 4813713 - 4813902
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||| || ||||||||     |||||||||||||  ||||||||||||| || | |||||||||||||||||||||||||    
T  4813713 atagttatcttcatttaatacacctctccatttaaatagttttccatgaatacctttaaattaattacttttcattccaccaacttacttacttttaata 4813812  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||  ||||||||||||||||| |||||||||||||||| ||||| || |||| ||| ||||||||  |||||| ||||| |||| ||||    
T  4813813 ttccttctcataataaataagggcacaaatgaaatttagtttcaagcacacttaaaaattggtcaaagtttctcgtaaaatggaccaaaa 4813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 35050267 - 35050426
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| |||    ||| |||||| |||||||||||||||||| | || ||||||||||||||||||||    
T  35050267 atagtcatcttcatttaatacacttctacatttaaaaaaaaaat-atgtatacccttaaattaattactctttatttcatcaacttacttacttttaata 35050365  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttg 162  Q
    |||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  35050366 ttctctctcataatcaataaggacacaaatgaaatttagcttcagacatacttgaaacttg 35050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 30222923 - 30222758
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||| ||  |||||||||||| ||| |  ||||||| || |||||||||||||||||| |||| ||||||||||||||||||||    
T  30222923 atagtcatcttcatttaatatacttctacatttaaaa-aaagtatatgaatatccttaaattaattactctttaatccatcaacttacttacttttaata 30222825  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 168  Q
    |||||  ||||||| |||||| ||||||||||| |||||| ||||||||| |||||||||| |||||    
T  30222824 ttctctttcataatcaataagaacacaaatgaattttagcatcaaacatatttgaaacttgatcaat 30222758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 45192535 - 45192673
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||| ||  |||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||    
T  45192535 atagtcatcttcatttaatatacttctacatttaaaa-aaattccatgaatacccttaaattaattactctttattccatcaacttacttatttttaata 45192633  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagc 141  Q
    |||  ||||||||| |||||| ||||||||||| ||||||    
T  45192634 ttctgtctcataattaataagaacacaaatgaattttagc 45192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 23933323 - 23933446
Alignment:
Q  48 catgaatacccctaaattaattactctttactccaccaacttacttactttt-aatattctctcata--ataaataaggacacaaatgaaatttagcttc 144  Q
    |||||||||||||||||||||||||||| | || |||||||| |||| |||| ||||||||||||||  |||||||||| ||||||||||||||| ||||    
T  23933323 catgaatacccctaaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttc 23933422  T
Q  145 aaacatacttgaaacttggtcaat 168  Q
    ||||| | |||||| |||||||||    
T  23933423 aaacacatttgaaaattggtcaat 23933446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 11908067 - 11907918
Alignment:
Q  45 ttccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctcataataaataaggacacaaatgaaatttagcttc 144  Q
    |||||||||||||  || ||||||||||||| | |||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||| ||     
T  11908067 ttccatgaatacctttacattaattactcttgattccaccaacttatttatttttaatactctctcataataaataaagacacaaatgaaatttagtttt 11907968  T
Q  145 aaacatacttgaaacttggtcaatatttctcataaaaagga-caaaaata 193  Q
     |||| |||| ||| ||  ||||| ||||| |||||| ||| ||||||||    
T  11907967 caacacacttaaaaattattcaatgtttcttataaaatggatcaaaaata 11907918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 13879011 - 13879161
Alignment:
Q  4 atagttatcttcatttaatacaccact---acatttaaaacaaat--tccatgaatacccctaaattaattactctttactccaccaacttacttacttt 98  Q
    ||||| ||||||||||||||||| |||   |||||||||| |||   | ||||||||||  |||||||||||||||||  |||||||||||| ||||| |    
T  13879011 atagtcatcttcatttaatacactacttctacatttaaaaaaaaaaattcatgaatacct-taaattaattactctttcttccaccaacttatttactat 13879109  T
Q  99 taatattct--ctcataataaataaggacacaaatgaaatttagcttcaaac 148  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||| ||||    
T  13879110 taatattctatctcataataaataagggcacaaatgaaatttagctttaaac 13879161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 35121293 - 35121214
Alignment:
Q  111 ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  |||| ||||||||||| ||||    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaat-cttcttataaaaaggaccaaaa 35121214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 35121378 - 35121293
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaactta 90  Q
    ||||| |||||||||||||||||  | |||||||||| ||| | ||||||||||| |||||||||| ||||||| ||||| ||||||    
T  35121378 atagtcatcttcatttaatacacttc-acatttaaaaaaaaattcatgaatacccttaaattaattcctctttattccactaactta 35121293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 26961165 - 26961214
Alignment:
Q  90 acttacttttaatattctctcataataaataaggacacaaatgaaattta 139  Q
    ||||||||||||||||||||| |||||||||||| |||| ||||| ||||    
T  26961165 acttacttttaatattctctcctaataaataaggtcacatatgaagttta 26961214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 38859036 - 38858944
Alignment:
Q  88 ttacttacttttaatattctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaagga 185  Q
    ||||||||||||||||||||||     |||||||||||||| |||| ||||| |||| || | | |||||| ||||||||  ||||| ||||||||||    
T  38859036 ttacttacttttaatattctct-----taaataaggacacacatgacatttaacttctaatacatttgaaaattggtcaaagtttcttataaaaagga 38858944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 35428491 - 35428426
Alignment:
Q  49 atgaatacccctaaattaattactctttactcc----accaacttacttacttttaatattctctc 110  Q
    |||||||||| |||||||||||||||||| |||    | ||||||||||||||||||| |||||||    
T  35428491 atgaatacccttaaattaattactctttattccatcaatcaacttacttacttttaattttctctc 35428426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 27627983 - 27627802
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||| |   |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27627983 atagttatcttcatttaatatatttctacatttaaaaaaaattacatgaatacccctaaattaattactctttattccaccaacttacttacttttaata 27627884  T
Q  104 ttctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaagga 185  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27627883 ttctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaagga 27627802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 783024 - 782836
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||||||||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  783024 atagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaata 782926  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  782925 ttctctctcataataaataagggcacaaaagaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacaaaaa 782836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 36187550 - 36187352
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||||||||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  36187550 atagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaata 36187452  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaataaaattcac 201  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||| |||||||||    
T  36187451 ttctctctcataataaataagggcacaaatgaaatttagcttcaaatatacttgaaacttggttaatatttcttataaaaaggaccaaaaaaaaattcac 36187352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 26877396 - 26877206
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattc-catgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    ||||||||||||| |||||||||| |||||||||||| |||    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26877396 atagttatcttcagttaatacacctctacatttaaaaaaaaaaatcatgaatacccctaaattaattactctttattccaccaacttacttacttttaat 26877297  T
Q  103 attct--ctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||    
T  26877296 attctatctcataataaataaggacacaaatgaaatttagcttcaaacatacttaaaatttggtcaatatttcttataaaaaggaccaaaa 26877206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 30537593 - 30537780
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| ||||||||||||||||   |||||||||||| |  || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30537593 atagtcatcttcatttaatacatttctacatttaaaa-atttttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaata 30537691  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  30537692 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaat-cttcttataaaaaggacaaaaa 30537780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 43034092 - 43034279
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| || ||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||    
T  43034092 atagtcatcttcatttaatacacttctacatttaaaataa-ttctatgaatacccttaaattaattactctttattccatcaacttacttacttttaata 43034190  T
Q  104 t--tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |  ||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||  |||| ||||||||||| ||||    
T  43034191 ttctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaaggaccaaaa 43034279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 3067957 - 3067771
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  ||||||||| || |||||| ||||||||| |||||||||||  |||||| || || |||||| |||||||||||     
T  3067957 atagtcatcttcatttaatacacttctacatttagaa-aaattc-atgaatacctctaaattaattcttctttattctactaacttatttacttttaatt 3067860  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  3067859 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaat-cttcttataaaaaggacaaaaa 3067771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 50150286 - 50150466
Alignment:
Q  10 atcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctc- 108  Q
    ||||||||||||||  |  ||||||||||||  || || | |||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||     
T  50150286 atcttcatttaatatgcttctacatttaaaa--aactctaggaatacccttaaattaattactttttattccatcaacttacttacttttaatattctct 50150383  T
Q  109 -tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
     ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||||||| ||||    
T  50150384 ctcataatcaataaggacacaaatgaaatttagcttcaaacatacttaaaacttgatcaat-cttcttataaaaaggaccaaaa 50150466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 25934527 - 25934384
Alignment:
Q  48 catgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctc--ataataaataaggacacaaatgaaatttagcttca 145  Q
    ||||||||||| |||||||||| ||||||| ||||| |||||| ||| ||||||| |||||||  ||||||||||||| ||||||||||||||| |||||    
T  25934527 catgaataccc-taaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttca 25934429  T
Q  146 aacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||    
T  25934428 aacatacttgaaacttggtcaat-cttcttataaaaaggacaaaaa 25934384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 33313462 - 33313300
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||   || |||||||| ||| | |||||||| || ||||||||||  |||||| ||||| |||||| |||||||||||     
T  33313462 atagtcatcttcatttaatacacttttatatttaaaaaaaaattcatgaatatccataaattaattcatctttattccactaacttatttacttttaatt 33313363  T
Q  104 t--tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggt 164  Q
    |  ||||||||||||||||||| ||||||| |||||||  || ||||||| || |||||||||    
T  33313362 ttctctctcataataaataagggcacaaataaaatttatatttaaacatatttaaaacttggt 33313300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 56551480 - 56551573
Alignment:
Q  48 catgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctc--ataataaataaggacacaaatgaaatttagctt 143  Q
    |||| ||||||||| ||||||||||||| | ||||| ||||| |||    ||| |||||||||  ||||||| ||||| |||||||||||||||||||    
T  56551480 catgtatacccctatattaattactcttaattccacaaacttgctt----ttagtattctctctaataataattaagggcacaaatgaaatttagctt 56551573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 39778612 - 39778802
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaa-ttccatgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  39778612 atagttatcttcatttaatacacctctacatttaaaaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaat 39778711  T
Q  103 attctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  39778712 attctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaa 39778802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 10728255 - 10728443
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10728255 atagttatcttcagttaatacacctctacatttaaaaaaaattc-atgaatacccctaaattaattactctttattccaccaacttacttacttttaata 10728353  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  10728354 ttctctctcataataaataagggcataaatgaaatttagcttcaaacatacttgaaactttgtcaatatttcttataaaaaggaccaaaa 10728443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 10700186 - 10700374
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  10700186 atagttattttcatttaatacacctctacatttaaaa-aaattccatgaatacccctaaattaattactctttattccaccaacttatttacttttaata 10700284  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||    
T  10700285 ttctctctcataataagtaagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaagactaaaa 10700374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 25187169 - 25186981
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||| | |||||||||||||||||||||||||    
T  25187169 atagttatcttcatttaatacacctctacatttaaaa-aaattccatgaatatccttaaattaattactcttaattccaccaacttacttacttttaata 25187071  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||    
T  25187070 ttctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaatgaccaaaa 25186981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 28831188 - 28831001
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||| |||| ||| ||| ||||  |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  28831188 atagttatcttcatttaatacacctctacgttttaaaaaaat--catgaatacccctaaattaattactctttattgcaccaatttacttacttttaata 28831091  T
Q  104 tt--ctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||  |||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||| ||||    
T  28831090 ttttctctcataataaataaggacacaaatgaaatttaacttcaaacatacttaaaatttggtcaatatttcttataaaaaggaccaaaa 28831001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 19926795 - 19926945
Alignment:
Q  51 gaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctcataataaataaggacacaaatgaaatttagcttcaaacat 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  19926795 gaatacccctaaattaattactctttattccaccaacttacttacttttaatattctctcataataaataagggcacaaatgaaatttagtttcaaacat 19926894  T
Q  151 acttgaaacttggtcaatatttctcataaaaaggacaaaaataaaattcac 201  Q
    |||| ||||||||||||||||||| ||||||||||| |||| ||| |||||    
T  19926895 acttaaaacttggtcaatatttcttataaaaaggaccaaaaaaaatttcac 19926945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 36191536 - 36191725
Alignment:
Q  4 atagttatcttcatttaatacaccactacattt-aaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    ||||||||||| |||||||||||| ||| |||| |||| |||   ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  36191536 atagttatctttatttaatacacctctatatttcaaaaaaaaaatcattaatacccctaaattaattactctttattccac-aacttacttacttttaat 36191634  T
Q  103 attctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  36191635 attctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttagtcaatatttcttataaaaaggaccaaaa 36191725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 11964380 - 11964194
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  ||||||||||||  ||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||    
T  11964380 atagtcatcttcatttaatacacttctacatttaaaa--aattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaata 11964283  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||  ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||  |||| ||||||||||| ||||    
T  11964282 ttctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaaggaccaaaa 11964194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 21345043 - 21345228
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| ||||||||||| |||||  ||||||||||||||| ||| || ||||||| |||||||||||||||||| |||| |||||||||||||||||||     
T  21345043 atagtcatcttcatttattacacttctacatttaaaacaa-ttctataaatacccttaaattaattactctttattccatcaacttacttacttttaatt 21345141  T
Q  104 ttctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
     ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||| ||||    
T  21345142 ctctctcacaatcaataaggacacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccaaaa 21345228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 7105741 - 7105619
Alignment:
Q  48 catgaatacccctaaattaattactctttactccaccaacttacttacttttaata--ttctctcataataaataaggacacaaatgaaatttagcttca 145  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||    
T  7105741 catgaatacccctaaattaattactctttattccaccaacttacttacttttaatattttctctcataataaataagggcacaaatgaaatttaccttca 7105642  T
Q  146 aacatacttgaaacttggtcaat 168  Q
    | |||||||||||||||||||||    
T  7105641 agcatacttgaaacttggtcaat 7105619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 13693492 - 13693679
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  ||| |||||||| | |||| ||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||     
T  13693492 atagtcatcttcatttaatacacttctatatttaaaaaatattc-atgaatacccctaaattaattcctctttattccactaacttatttacttttaatt 13693590  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||  |||| ||||||||||| ||||    
T  13693591 ttctctctcataataaataaggacagaaatgaaatttatctttaaacatacttgaaacttggtcaat-cttcttataaaaaggaccaaaa 13693679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 42993768 - 42993955
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  ||| |||||||  |||| ||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||     
T  42993768 atagtcatcttcatttaatacacttctatatttaaataaaat-ccatgaatacccctaaattaattcctctttattccactaacttatttacttttaatt 42993866  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  |||| |||||||| ||||||||||||||| |||||||||||||||||| |||||||||  |||| ||||||||||| ||||    
T  42993867 ttctctctcataacaaataagggcacaaatgaaatttatcttcaaacatacttgaaatttggtcaat-cttcttataaaaaggaccaaaa 42993955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 10448949 - 10448784
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| || ||  |||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||    
T  10448949 atagtcatcttcatttaatacacttctacatttaaaa-aagttatatgaatacccttaaattaattactatttattccatcaacttacttacttttaata 10448851  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 168  Q
    |||  ||||||||| ||||||  ||||||||||||||| |||||||||||||||||||||| |||||    
T  10448850 ttctctctcataatcaataagagcacaaatgaaatttaacttcaaacatacttgaaacttgatcaat 10448784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 41435614 - 41435736
Alignment:
Q  48 catgaatacccctaaattaattactctttactccaccaacttacttacttttaatattct--ctcataataaataaggacacaaatgaaatttagcttca 145  Q
    ||||||||||| |||||||||||||||||| | || ||||||| ||||||||||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  41435614 catgaatacccttaaattaattactctttatttcatcaacttatttacttttaatattctatctcataatcaataagggcacaaatgaaatttagcttca 41435713  T
Q  146 aacatacttgaaacttggtcaat 168  Q
    ||||||||||||||||| |||||    
T  41435714 aacatacttgaaacttgatcaat 41435736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 22066384 - 22066525
Alignment:
Q  51 gaatacccctaaattaattactctttactccaccaacttacttacttttaatattctc--tcataataaataaggacacaaatgaaatttagcttcaaac 148  Q
    |||||||| ||||||||||||| |||| |||| ||||| |||||||||||||||||||  ||||||| ||||||| ||||||||||||||||||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  149 atacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||||||||| |||||  |||| ||||||||||| ||||    
T  22066484 atacttgaaacttgatcaat-cttcttataaaaaggaccaaaa 22066525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 41462795 - 41462714
Alignment:
Q  105 tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  41462795 tctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggac 41462714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 16621977 - 16622055
Alignment:
Q  45 ttccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctcataataaataagg 123  Q
    |||||||||| |||||| |||||||||||||   || ||||||||||||| ||||||||||||||||||||||||||||    
T  16621977 ttccatgaatgcccctatattaattactcttatttctaccaacttacttatttttaatattctctcataataaataagg 16622055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 1365877 - 1365693
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||| | ||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  1365877 atagttatcttcatttaatacatctctacatttacaaaaaattccatgaatacccttaaattaattactctttattccaccaacttacttacttttaata 1365778  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
    |||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1365777 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggac 1365693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 7243378 - 7243566
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  7243378 atagttatcttcatttaatacacctctacatttaaaaaaaat-ccatgaatacccctaaattaattattctttattccaccaacttacttacttttaata 7243476  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  7243477 ttctctctcataataaataagggcacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaaaa 7243566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 24337978 - 24338162
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||||||||||||||||    || |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  24337978 atagttatcttcatttaa----cctctacatttaaaa-aaattccatgaataaccctaaattaattactctttattccaccaacttacttacttttaata 24338072  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  24338073 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaaaa 24338162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 23319938 - 23320117
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23319938 atagttatcttcgtttaatacacctctacatttaaaa-aatttccatgaatacccctaaattaattactctttattccaccaacttacttacttttaata 23320036  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaa 182  Q
    |||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23320037 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 23320117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 48390282 - 48390480
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||||||||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||||| | |||| | || ||||||||||||||||||||    
T  48390282 atagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattttttatttcatcaacttacttacttttaata 48390380  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaataaaattcac 201  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  48390381 ttctcactcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggataaaaaaaaaattcac 48390480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 18674737 - 18674541
Alignment:
Q  1 aatatagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttactttta 100  Q
    |||||||| ||||||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |    
T  18674737 aatatagtcatcttcatttaatacatttctacatttaaaa-aaatttcatgaatacccctaaattaattactctttattccaccaacttacttattttca 18674639  T
Q  101 atattctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaataaaat 197  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  18674638 atattctctcttataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaat-tttcttataaaaaggacaaaaaaaaaat 18674541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 48394171 - 48394321
Alignment:
Q  51 gaatacccctaaattaattactctttactccaccaacttacttacttttaatattctctcataataaataaggacacaaatgaaatttagcttcaaacat 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  48394171 gaatacccctaaattaattactctttattccaccaacttacttacttttaatattctttcataataaataagggcacaaatgaaatttagtttcaaacat 48394270  T
Q  151 acttgaaacttggtcaatatttctcataaaaaggacaaaaataaaattcac 201  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||||    
T  48394271 acttaaaacttggtcaatatttcttataaaaaggacaaaaaaaaaattcac 48394321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 7568141 - 7568306
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| ||||||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7568141 atagtcatcttcatttaatacatttctacatttaaaa-aaatttcatgaatacccctaaattaattactctttattccaccaacttacttacttttaata 7568239  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 168  Q
    |||||  ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||    
T  7568240 ttctctttcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttgatcaat 7568306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 24989944 - 24989757
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| |||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||    
T  24989944 atagtcatcttcatttaatacacttctacatttaaaa-aaattctatgaatacccttaaattaattactctttattccatcaacttacttacttttaata 24989846  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||  ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||| ||||    
T  24989845 ttctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttctaataaaaaggaccaaaa 24989757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 41850979 - 41851143
Alignment:
Q  7 gttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatat-- 104  Q
    ||||||||||||||||||||| |||||||||||     ||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||      
T  41850979 gttatcttcatttaatacacctctacatttaaatttttttttatgaatacccctaaattaattactctttattccaccaactcacttacttttaatattc 41851078  T
Q  105 tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaata 169  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  41851079 tctctcataataaataagggtacaaatgaaatttagtttcaaacatacttgaaacttggtcaata 41851143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 8417834 - 8417702
Alignment:
Q  60 taaattaattactctttactccaccaacttacttacttttaatatt--ctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaa 157  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  8417834 taaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttgaa 8417735  T
Q  158 acttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||||| |||||  |||| ||||||||||||||||    
T  8417734 acttgatcaat-cttcttataaaaaggacaaaaa 8417702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 45062686 - 45062521
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||   ||||||||||| |||||| |||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||    
T  45062686 atagtcatcttcatttaatacacttttacatttaaaa-aaattctatgaatacccttaaattaattactttttattccatcaacttacttacttttaata 45062588  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaat 168  Q
    |||  ||||||||| || |||| |||| |||||||||||||| ||||||| |||||||||| |||||    
T  45062587 ttctctctcataatcaacaagggcacagatgaaatttagctttaaacatatttgaaacttgatcaat 45062521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 965166 - 965222
Alignment:
Q  85 aacttacttacttttaatattct--ctcataataaataaggacacaaatgaaattta 139  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaattta 965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 32305939 - 32305751
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||||||||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  32305939 atagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttacttacttttaata 32305841  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  32305840 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaaa 32305751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 35634753 - 35634941
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||||||||||||||||||   ||||||||||| |||| ||||||||| |||||||||||||||||||||   |||||||||||||||||||||||    
T  35634753 atagttatcttcatttaatacacttttacatttaaaaaaaat-ccatgaataaccctaaattaattactctttatcgcaccaacttacttacttttaata 35634851  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35634852 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgacaaaaa 35634941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 8669964 - 8669777
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| |||||  |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||    
T  8669964 atagtcatcttcatttaatacacttctacatttaaaaaaaattt-atgaatacccttaaattaattactctttattccatcaacttacttacttttaata 8669866  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||  ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||  |||| ||||||||||||||||    
T  8669865 ttctctctcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaacttgatcaat-cttcttataaaaaggacaaaaa 8669777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 8107117 - 8106943
Alignment:
Q  11 tcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattct--c 108  Q
    ||||||||||||||||  |||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||| ||||  |    
T  8107117 tcttcatttaatacacttctacatttaaaaaaaattc-atgaatacccctaaattaattcctctttattccactaacttatttacttttaattttctatc 8107019  T
Q  109 tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaagga 185  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||| ||||||||||    
T  8107018 tcataataaataaggacacaaatgaaatttagtttcaaacatacttgaaacttggtcaat-cttcttataaaaagga 8106943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 29226506 - 29226326
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| |||||| || ||||||| |||||||||||||||||| |||| ||||||||||||||||||||    
T  29226506 atagtcatcttcatttaatacacttctacatttaaaa-aaattctatcaatacccttaaattaattactctttattccatcaacttacttacttttaata 29226408  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaagga 185  Q
    || ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||    
T  29226407 ttttcattcataatcaataagg-cacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaagga 29226326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 13882315 - 13882129
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| || ||| |||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||    
T  13882315 atagtcatcttcatttaatacacttctacatttaaaataa-ttctatgaatacccttaaattaattactctttattccatcaacttacttacttt-aata 13882218  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  ||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||  |||| ||||||||||| ||||    
T  13882217 ttctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaaggaccaaaa 13882129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 42570135 - 42569940
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaat-tccatgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    ||||||||||||||||||||||||  |||| |||||| |||  || ||||||| |||||||||||||||| |||| | || ||||||||||| |||||||    
T  42570135 atagttatcttcatttaatacacctttacaattaaaaaaaaaatctatgaatatccctaaattaattactatttatttcatcaacttacttatttttaat 42570036  T
Q  103 attctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaataaaa 196  Q
    ||||||||  |||||||||||   ||||||| ||||||||||||||  |||||| ||||||||||||||||||| |||||||| | ||||| ||||    
T  42570035 attctctctcataataaataaatgcacaaataaaatttagcttcaatgatacttaaaacttggtcaatatttcttataaaaagaataaaaaaaaaa 42569940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 37533998 - 37533816
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| ||||||||||||||||   |||||||||||| |||||  ||||||||   |||||||||||||||||| |||| ||||||||||| ||||||||    
T  37533998 atagtcatcttcatttaatacatttctacatttaaaaaaaattatatgaatacatttaaattaattactctttattccatcaacttacttatttttaata 37533899  T
Q  104 ttc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaagga 185  Q
    |||  ||||||||| ||||||| |||||| |||||||| ||||||| ||| |||||||||| |||||  |||| ||||||||||    
T  37533898 ttctctctcataatcaataagggcacaaacgaaatttaacttcaaatatatttgaaacttgatcaat-cttctaataaaaagga 37533816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 17855539 - 17855397
Alignment:
Q  45 ttccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattct--ctcataataaataaggacacaaatgaaatttagct 142  Q
    ||||| |||||||||||||||||||||| ||  |||||  |||||| |||||||||||| | |  ||||| ||||||||||| ||||||||||||||| |    
T  17855539 ttccaagaatacccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtt 17855440  T
Q  143 tcaaacatacttgaaacttggtcaatatttctcataaaaagga 185  Q
    || |||| |||| ||| ||| ||||||||||| ||||||||||    
T  17855439 tccaacacacttaaaaattgttcaatatttcttataaaaagga 17855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 36741715 - 36741815
Alignment:
Q  63 attaattactctttactccaccaacttacttacttttaatattctctc-----ataataaataaggacacaaatgaaatttagcttcaaacatacttgaa 157  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| |||| | |||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaacacatttgaa 36741814  T
Q  158 a 158  Q
    |    
T  36741815 a 36741815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 45177566 - 45177630
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaat 68  Q
    ||||| |||||||||||||||||  |||||||||||| |||||| ||||||| |  |||||||||    
T  45177566 atagtcatcttcatttaatacacttctacatttaaaaaaaattctatgaatatctttaaattaat 45177630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 27419921 - 27419874
Alignment:
Q  90 acttacttttaatattctctcataataaataaggacacaaatgaaatt 137  Q
    ||||||||||| ||||||||  |||||||||||||||||| |||||||    
T  27419921 acttacttttagtattctcttgtaataaataaggacacaagtgaaatt 27419874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 24868698 - 24868510
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||| ||| | |||| | ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24868698 atagtaatcttcatttaatacacctctataattaaga-aaattccattaacacccctaaattaattactctttattccaccaacttacttacttttaata 24868600  T
Q  104 ttctctc--ataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||  |||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  24868599 ttctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagacaaaaa 24868510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 40385196 - 40385387
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||  |||||||||||| | | |||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||     
T  40385196 atagtcatcttcatttaatacacttctacatttaaaaaataatccatgaatacccctaaattaattcctctttattccactaacttatttacttttaatt 40385295  T
Q  104 t--tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatat--ttctcataaaaaggacaaaaa 191  Q
    |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||| ||||    
T  40385296 ttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttcttataaaaaggaccaaaa 40385387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 3097509 - 3097706
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaat---tccatgaatacccctaaattaattactctttactccaccaacttacttactttta 100  Q
    ||||| |||||||||||||||||  |||||||||||| |||    |||||| ||||||||||||||| | ||||||| ||||| |||||| |||||||||    
T  3097509 atagtaatcttcatttaatacacttctacatttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattccactaacttatttactttta 3097608  T
Q  101 atattc--tctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaataaaat 197  Q
    || |||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| |||||    
T  3097609 attttcactctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaat-cttcttataaaaaggacaaaaaaaaaat 3097706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 33314553 - 33314372
Alignment:
Q  10 atcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatattc--t 107  Q
    ||||||||||||||||   ||||| |||||| ||||| ||||||||  |||||||||||||||||||| ||||||||||| ||||||||||||||||  |    
T  33314553 atcttcatttaatacatttctacacttaaaa-aaatttcatgaatattcctaaattaattactctttattccaccaacttgcttacttttaatattctct 33314455  T
Q  108 ctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||  |||| ||||||||||| ||||    
T  33314454 ctcataataaatgagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaat-cttcttataaaaaggaccaaaa 33314372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 21262897 - 21263047
Alignment:
Q  42 aaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaatat--tctctcataataaataaggacacaaatgaaattta 139  Q
    |||||| || ||||||| |||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||| |||| || | |||||||||||||    
T  21262897 aaattctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaattta 21262996  T
Q  140 gcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    ||||||||||||||||||||||| |||||  |||| ||||||||||| ||||    
T  21262997 gcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccaaaa 21263047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 41174622 - 41174810
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||| ||  ||| |||| ||| ||| | ||||||||||||| |||||||| ||||||| | ||| |||||| ||||||||||      
T  41174622 atagtcatcttcatttaatatacttctatattttaaaaaaaattcatgaatacccctcaattaattcctctttatttcactaacttatttacttttaact 41174721  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
    |||||  ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||  |||| ||||||||||| ||||    
T  41174722 ttctctctcataataaataagggcacaaatgaaatttagcttaaaatatacttgaaacttggtcaat-cttcttataaaaaggaccaaaa 41174810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 4238086 - 4237936
Alignment:
Q  3 tatagttatcttcatttaatacaccactacatttaaaacaaattcc-atgaatacccctaaattaattactctttactccaccaacttacttacttttaa 101  Q
    |||||||||||||||||||| || | ||||||||||      |||| ||||||||||||||||||||||||||| | |||||||| ||||||  |||||     
T  4238086 tatagttatcttcatttaatgcatctctacatttaattatttttccgatgaatacccctaaattaattactcttgattccaccaatttacttcattttat 4237987  T
Q  102 tattc--tctcataataaataaggacacaaatgaaatttagcttcaaacat 150  Q
    |||||  ||||||||||||||| | ||||||||||||||| ||||||||||    
T  4237986 tattctatctcataataaataacggcacaaatgaaatttaacttcaaacat 4237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 2934853 - 2935034
Alignment:
Q  6 agttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttactttt-aatat 104  Q
    |||||| ||||||||||||| | |||||||||||     || ||| ||||| ||||||||||||||| || | |||  ||| ||| |||||||| ||||     
T  2934853 agttatattcatttaatacatctctacatttaaattt--tttcataaatactcctaaattaattacttttgattccggcaatttatttactttttaataa 2934950  T
Q  105 --tctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
      |||||||||||||||||||  | |||||||||||| ||||||| | |||| ||| ||||| ||| ||||| |||||||||||    
T  2934951 cctctctcataataaataagggtataaatgaaatttaacttcaaatacacttaaaaattggtaaatctttcttataaaaaggac 2935034  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 4238227 - 4238147
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaa 86  Q
    |||||||||||||||||||||| | ||||||||||      |||| |||||||||||||||||||||||||| | ||||||||    
T  4238227 atagttatcttcatttaatacatctctacatttaatttt--ttccctgaatacccctaaattaattactcttgattccaccaa 4238147  T

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Target: scaffold0067 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 6936 - 6755
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattcc-atgaatacccctaaattaattactctttactccaccaacttacttacttttaat 102  Q
    |||||||||||||||||||||| | ||||||||||      || | ||||||| || |||||||||||||||||| || |||||||||||||||||||||    
T  6936 atagttatcttcatttaatacatctctacatttaatttttttttctatgaatatccttaaattaattactctttattctaccaacttacttacttttaat 6837  T
Q  103 attct--ctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaa 182  Q
    |||||  |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6836 attctttctcataataaataagcgcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 6755  T

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Target: scaffold0057 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 30641 - 30463
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    |||||||| || |||||||||||| || ||||||||     |||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  30641 atagttattttaatttaatacacctctgcatttaaatttt-ttccataaatacccctaaattaattactcttgattccgccaacttacttacttttaata 30543  T
Q  104 tt--ctctcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaa 181  Q
    ||  |||||||||||||||||| |||||||||||||||  |||||||| |||||||| |||||||| |||||| ||||||    
T  30542 ttgtctctcataataaataagggcacaaatgaaatttaatttcaaacaaacttgaaaattggtcaacatttcttataaaa 30463  T

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Target: scaffold0057; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 30839 - 30969
Alignment:
Q  52 aatacccctaaattaattactctttactccaccaacttacttacttttaatat--tctctcataataaataaggacacaaatgaaatttagcttcaaaca 149  Q
    |||||||||||||||||||||||| | |||||||    || ||||||||||||  ||||||||||||||||||| | || |||||       ||||||||    
T  30839 aatacccctaaattaattactcttgattccacca----acatacttttaatattctctctcataataaataagggcgcacatgaa------tttcaaaca 30928  T
Q  150 tacttgaaacttggtcaatatttctcataaaaaggacaaaaa 191  Q
     |||| ||| |||||||| |||||| || |||||||||||||    
T  30929 cacttaaaaattggtcaacatttcttat-aaaaggacaaaaa 30969  T

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Target: scaffold0008 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 258287 - 258461
Alignment:
Q  4 atagttatcttcatttaatacaccactacatttaaaacaaattccatgaatacccctaaattaattactctttactccaccaacttacttacttttaata 103  Q
    ||||| |||||||||||||||||| ||| |||||| | ||||||||| || ||||||||||||||||||||          |||||||||| ||||||||    
T  258287 atagtaatcttcatttaatacacctctatatttaaga-aaattccatcaacacccctaaattaattactcta---------aacttacttaattttaata 258376  T
Q  104 ttctc--tcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttctcataaaaaggac 186  Q
    |||||  ||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  258377 ttctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggac 258461  T

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