View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_low_14 (Length: 303)
Name: NF7791_low_14
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 138 - 284
Target Start/End: Original strand, 43131671 - 43131817
Alignment:
| Q |
138 |
tttatgaaaagtgggaaaaggggtggtaatagtcaaatttgaaaagtgtagaaatcaatgtgtatgggagtggctgttttttactttgtcaaaatttgtc |
237 |
Q |
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| T |
43131671 |
tttatgaaaagtgggaaaaggggtgataatagtcaaatttgaaaagtgtagaaatcaatgtgtatgggagtgcctgttttttactttgtcaaaatttgtc |
43131770 |
T |
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| Q |
238 |
attagtgtttcagtgtatggggtatagtgcatgtgcatagtgctgaa |
284 |
Q |
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| T |
43131771 |
attagtgtttcagtgtatggggtatagtgcatgtgcatagtgctgaa |
43131817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43131509 - 43131608
Alignment:
| Q |
1 |
agttactattgcttttaatcactttggtgaaggccttgttcaaagaatgccaaggtaatcat---atact---ttaaatttaattaatgatatataaatt |
94 |
Q |
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| T |
43131509 |
agttactattgcttttaatcactttggtgaaggccttgttcaaagaatgccaaggtaatcatcatatactaatttaaatttaattaatgatatataaatt |
43131608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7593308 - 7593252
Alignment:
| Q |
1 |
agttactattgcttttaatcactttggtgaaggccttgttcaaagaatgccaaggta |
57 |
Q |
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| T |
7593308 |
agttactattgcttttaatcattttggtgaagggcttgtccaaagaatgccaaggta |
7593252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 34288337 - 34288286
Alignment:
| Q |
8 |
attgcttttaatcactttggtgaaggccttgttcaaagaatgccaaggtaat |
59 |
Q |
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| T |
34288337 |
attgcttttaaccactttggtgaaggactcgttcaaagaatgccaaggtaat |
34288286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39076075 - 39076132
Alignment:
| Q |
1 |
agttactattgcttttaatcactttggtgaaggccttgttcaaagaatgccaaggtaa |
58 |
Q |
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| T |
39076075 |
agttaccattgcctttaaccattttggagaaggactagttcaaagaatgccaaggtaa |
39076132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 50436832 - 50436794
Alignment:
| Q |
14 |
tttaatcactttggtgaaggccttgttcaaagaatgcca |
52 |
Q |
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| T |
50436832 |
tttaatcactttggtgaaggacttgttcaaagaatgcca |
50436794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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