View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_low_19 (Length: 239)
Name: NF7791_low_19
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_19 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 36312819 - 36312598
Alignment:
| Q |
18 |
gaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgttaacattggtttgggctatgtttgc |
117 |
Q |
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| T |
36312819 |
gaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgttaacattggtttgggctatgtttgt |
36312720 |
T |
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| Q |
118 |
gtgagaaatcgcatcggggaggaatcctatgaagaagctagaaatgaagagcataagttgtttgagtctcactcacttctttctaagattgacaaatcca |
217 |
Q |
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| T |
36312719 |
gtgagaaatcgcatcggggaggaatcctatgaagaagctagaaatgaagagcataagttgtttgagtctcactcacttctttctaagattgacaaatcca |
36312620 |
T |
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| Q |
218 |
ttgttggtattcttgttttggc |
239 |
Q |
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| T |
36312619 |
ttgttggtattcctgttttggc |
36312598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 36290336 - 36290118
Alignment:
| Q |
18 |
gaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgttaacattggtttgggctatgtttgc |
117 |
Q |
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| T |
36290336 |
gaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttaccgctgatgatgttaacatcggtctaggttatgtctgt |
36290237 |
T |
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| Q |
118 |
gtgagaaatcgcatcggggaggaatcctatgaagaagctagaaatgaagagcataagttgtttgagtctcactcacttctttctaagattgacaaatcca |
217 |
Q |
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| T |
36290236 |
gtgcgaaaccgaattggagatgagacctatgaagatgctagactggaagaagaaaagctgtttgagtctcactcacttctttctaagattgacaaaacca |
36290137 |
T |
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| Q |
218 |
ttgttggtattcttgtttt |
236 |
Q |
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| T |
36290136 |
ttgttggtattcctgtttt |
36290118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 15997268 - 15997323
Alignment:
| Q |
38 |
caaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgtt |
93 |
Q |
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| T |
15997268 |
caaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 33579730 - 33579675
Alignment:
| Q |
38 |
caaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgtt |
93 |
Q |
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|||||||| ||||||| | |||||| ||||| |||||||| ||||||||||||||| |
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| T |
33579730 |
caaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
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