View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_low_2 (Length: 647)
Name: NF7791_low_2
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 17 - 629
Target Start/End: Original strand, 17576747 - 17577357
Alignment:
| Q |
17 |
ataataatgagattcacacttcataannnnnnncacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgag |
116 |
Q |
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| T |
17576747 |
ataataatgagattcacacttcataatttttttcacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgag |
17576846 |
T |
|
| Q |
117 |
ttttaatgaaagcttcttagggataggagagatttaatctgaaattttgtgatcctttacatgctacaactccctttttactaaaaaccataacaatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17576847 |
ttttaatgaaagcttcttagggataggagagatttaatctgaaattttgtgaccctttacatgctacaactccctttttactaaaaaccataacaatacc |
17576946 |
T |
|
| Q |
217 |
tcgtggcataaaggttagtagtattcaggttacttgttagcattagataaaccagtttgctttcttgtgatataattctgactccatcttattgcttaan |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17576947 |
tcgtggcataaaggttagtagtattcaggttacttgttagcattagataaaccagtttgctttcctgtgatataattctgactccatcttattgcttaat |
17577046 |
T |
|
| Q |
317 |
nnnnnnncccacttttgtgattgaaattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctctgt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577047 |
ttttt--cccacttttgtgattgaaattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctctgt |
17577144 |
T |
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| Q |
417 |
cctcgaaagatcttctattgtttgcactctacatgttcataatagcaccaaataacttaagaatgtctctagtcagacatctgctttcagatcctacagg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577145 |
cctcgaaagatcttctattgtttgcactctacatgttcataatagcaccaaataacttaagaatgtctctagtcagacatctgctttcagatcctacagg |
17577244 |
T |
|
| Q |
517 |
gtcaactatgataaaaacctacttgacgatatagtacgtttctataaactttttcctcttgttaggtaccctctattgggagacaggctagattacatta |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
17577245 |
gtcaactatgataaaaacctacttgacgatatagtacgtttctataaactttttcctcttgttaggtaccctgtattgagagacaggctagattacatta |
17577344 |
T |
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| Q |
617 |
ggagccttaatag |
629 |
Q |
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||||||||||||| |
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| T |
17577345 |
ggagccttaatag |
17577357 |
T |
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