View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7791_low_25 (Length: 212)
Name: NF7791_low_25
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_25 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 370582 - 370793
Alignment:
| Q |
1 |
tatgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
370582 |
tatgagactctcaacgtagacattagagatgaatgaagttgaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatat |
370681 |
T |
|
| Q |
101 |
acctgatcaaagaagtccaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaatat |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
370682 |
acctgatcaaagaagttcaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaatat |
370781 |
T |
|
| Q |
201 |
tgaacaatttag |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
370782 |
tgaacaatttag |
370793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 1453636 - 1453737
Alignment:
| Q |
3 |
tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||| |||||| |||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
1453636 |
tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac |
1453735 |
T |
|
| Q |
103 |
ct |
104 |
Q |
| |
|
|| |
|
|
| T |
1453736 |
ct |
1453737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 1465328 - 1465429
Alignment:
| Q |
3 |
tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||| |||||| |||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
1465328 |
tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac |
1465427 |
T |
|
| Q |
103 |
ct |
104 |
Q |
| |
|
|| |
|
|
| T |
1465428 |
ct |
1465429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University