View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7791_low_3 (Length: 635)

Name: NF7791_low_3
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7791_low_3
NF7791_low_3
[»] chr1 (10 HSPs)
chr1 (1-469)||(23552532-23553000)
chr1 (1-311)||(23305210-23305520)
chr1 (157-247)||(23324170-23324260)
chr1 (157-306)||(23234927-23235073)
chr1 (528-583)||(32060554-32060609)
chr1 (532-583)||(35754030-35754081)
chr1 (35-115)||(23235094-23235174)
chr1 (550-583)||(23552505-23552538)
chr1 (584-617)||(35754268-35754301)
chr1 (1-29)||(23553046-23553074)
[»] chr8 (10 HSPs)
chr8 (528-583)||(7840034-7840089)
chr8 (528-583)||(29668752-29668807)
chr8 (528-583)||(11676271-11676326)
chr8 (528-583)||(30735970-30736025)
chr8 (584-616)||(13958543-13958575)
chr8 (584-616)||(29668932-29668964)
chr8 (584-616)||(30735783-30735815)
chr8 (586-616)||(990169-990199)
chr8 (584-616)||(11668241-11668273)
chr8 (584-616)||(11676543-11676575)
[»] chr5 (4 HSPs)
chr5 (528-583)||(2643668-2643723)
chr5 (528-583)||(2315919-2315974)
chr5 (528-583)||(11016002-11016057)
chr5 (584-616)||(11016226-11016258)
[»] chr4 (7 HSPs)
chr4 (528-583)||(28071453-28071508)
chr4 (528-583)||(50063749-50063804)
chr4 (176-253)||(10174692-10174769)
chr4 (584-616)||(2035280-2035312)
chr4 (528-562)||(25516846-25516880)
chr4 (528-562)||(25536738-25536772)
chr4 (584-616)||(28071270-28071302)
[»] chr3 (9 HSPs)
chr3 (528-583)||(2544979-2545034)
chr3 (528-583)||(35127214-35127269)
chr3 (528-583)||(36430005-36430060)
chr3 (528-583)||(46278520-46278575)
chr3 (584-616)||(9291987-9292019)
chr3 (584-616)||(35127052-35127084)
chr3 (584-615)||(2545206-2545237)
chr3 (586-616)||(36430155-36430185)
chr3 (586-616)||(37921841-37921871)
[»] chr6 (6 HSPs)
chr6 (528-583)||(12667-12722)
chr6 (528-583)||(17702-17757)
chr6 (528-583)||(9941-9996)
chr6 (584-616)||(9733-9765)
chr6 (584-616)||(12459-12491)
chr6 (584-616)||(3185890-3185922)
[»] chr7 (1 HSPs)
chr7 (160-247)||(37120092-37120179)


Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 23553000 - 23552532
Alignment:
Q  1 cagagtggtagaacttgaatcctcagcacgaaccacctcgacgtcattcccaccaccataaattggagtaacagtcttatcagtaacttcacccttacag 100  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23553000 cagagtggtagaacttgaatcctcagcacgaaccacctcaacttcattcccaccaccataaattggagtaacagtcttatcagtaacttcacccttgcag 23552901  T
Q  101 acaggacattctttagctagagaggatcttctaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaaacaaatggccacaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  23552900 acaggacattctttagctagagaggatcttctaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaaacaaatgaccgcaac 23552801  T
Q  201 aagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaacatctatcattgccacaatccttttcatcaacattctcctttttctc 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23552800 aagtaagaacaggttccttagccaaatcaaaacaaatattacaatcatagaaacctctatcattgccacaatccttttcatcaacattctcctttttctc 23552701  T
Q  301 tgatgttttacgatcaatgtccatcggaacctgtccagattcagaaagattacttcgacgaccagattgacgaaaagaatcattaacaatcggttccaga 400  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23552700 tgatgttttacgataaatgtccatcggaaccggtccagattcagaaagattacttcgacgaccagattgacgaaaagaatcattaacaatcggttccaga 23552601  T
Q  401 tcaatgtccattggaatcggacctgattcttggttccgcatagtagcttgagaaaagagagataacaaa 469  Q
    ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| ||| |||||    
T  23552600 tcaatgtccattggaatcggacctgattcttggttcctcgtcgtagcttgagaaaagagggattacaaa 23552532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 23305520 - 23305210
Alignment:
Q  1 cagagtggtagaacttgaatcctcagcacgaaccacctcgacgtcattcccaccaccataaattggagtaacagtcttatcagtaacttcacccttacag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23305520 cagagtggtagaacttgaatcctcagcacgaaccacctcgacgtcattcccaccaccataaattggagtaacagtcttatcagtaacttcacccttgcag 23305421  T
Q  101 acaggacattctttagctagagaggatcttctaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaaacaaatggccacaac 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23305420 acaggacattctttagctagagaggatcttgtaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaaacaaatggccacaac 23305321  T
Q  201 aagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaacatctatcattgccacaatccttttcatcaacattctcctttttctc 300  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  23305320 aagtaagaacaggatccttagccaatacaaaacaaatattacaatcatagaaacctctatcattgccacaatccttttcatcaatattctcctttttctc 23305221  T
Q  301 tgatgttttac 311  Q
    |||||| ||||    
T  23305220 tgatgtcttac 23305210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 23324260 - 23324170
Alignment:
Q  157 caaccatctatacaagcatggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatca 247  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| |||||||||||| ||||||||||||||||||    
T  23324260 caaccatctatacaagcatggccaacaaaacaaatgaccacaacaagtaaccacaggattcttagccaaatctaaacaaatattacaatca 23324170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 157 - 306
Target Start/End: Complemental strand, 23235073 - 23234927
Alignment:
Q  157 caaccatctatacaagcatggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaacat 256  Q
    |||||||||||| || ||||||||||| |||||||| || |||| ||| | ||||||||||||||||||| | ||||||||||||||||||||||||| |    
T  23235073 caaccatctatataaacatggccaacagaacaaatgaccgcaacgagtcacaacaggatccttagccaaacctaaacaaatattacaatcatagaaacct 23234974  T
Q  257 ctatcattgccacaatccttttcatcaacattctcctttttctctgatgt 306  Q
    |  | | | |||||| | ||   ||||||||||||||||||||| |||||    
T  23234973 cctttactaccacaaccgtt---atcaacattctcctttttctccgatgt 23234927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 32060609 - 32060554
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32060609 accggtgccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 32060554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 532 - 583
Target Start/End: Original strand, 35754030 - 35754081
Alignment:
Q  532 gtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35754030 gtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 35754081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 23235174 - 23235094
Alignment:
Q  35 acctcgacgtcattcccaccaccataaattggagtaacagtcttatcagtaacttcacccttacagacaggacattcttta 115  Q
    |||||||| ||||||||||||||||| || ||| ||||  |||||||  ||||||| ||||| || |||||||||||||||    
T  23235174 acctcgacatcattcccaccaccatatataggaataaccttcttatccttaacttcccccttgcaaacaggacattcttta 23235094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 550 - 583
Target Start/End: Complemental strand, 23552538 - 23552505
Alignment:
Q  550 ttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||||||||||||||||||    
T  23552538 ttacaaaacggtatcagcagccaccgtgaccgtt 23552505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 584 - 617
Target Start/End: Original strand, 35754268 - 35754301
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgct 617  Q
    ||||||||||||||||||||||||||||||||||    
T  35754268 acaaatcaattacttacttctcttcctgcttgct 35754301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23553074 - 23553046
Alignment:
Q  1 cagagtggtagaacttgaatcctcagcac 29  Q
    |||||||||||||||||||||||||||||    
T  23553074 cagagtggtagaacttgaatcctcagcac 23553046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 7840089 - 7840034
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7840089 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 7840034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 29668752 - 29668807
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  29668752 accggtaccgggattgtggccgttacaaaacggtatcagcagccaccgtgaccgtt 29668807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 11676271 - 11676326
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  11676271 accggtaccgggattgcggccgttacaaatcggtatcggcagccaccgtgaccgtt 11676326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 30736025 - 30735970
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  30736025 accggtgccgggattgaggccgttacaaaacggtatcagcagccaccgtgaccgtt 30735970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Original strand, 13958543 - 13958575
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  13958543 acaaatcaattacttacttctcttcctgcttgc 13958575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Original strand, 29668932 - 29668964
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  29668932 acaaatcaattacttacttctcttcctgcttgc 29668964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 30735815 - 30735783
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  30735815 acaaatcaattacttacttctcttcctgcttgc 30735783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 616
Target Start/End: Complemental strand, 990199 - 990169
Alignment:
Q  586 aaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||    
T  990199 aaatcaattacttacttctcttcctgcttgc 990169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 616
Target Start/End: Original strand, 11668241 - 11668273
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||| ||||||||||||||||||||||||||    
T  11668241 acaaatgaattacttacttctcttcctgcttgc 11668273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 616
Target Start/End: Original strand, 11676543 - 11676575
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||| ||||||||||||||||||||||||||    
T  11676543 acaaatgaattacttacttctcttcctgcttgc 11676575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 2643723 - 2643668
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2643723 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 2643668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 2315974 - 2315919
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  2315974 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgatcgtt 2315919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 11016002 - 11016057
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  11016002 accggtaccggaattgcggacgttacaaaacggtatcagcggccaccgtgaccgtt 11016057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Original strand, 11016226 - 11016258
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  11016226 acaaatcaattacttacttctcttcctgcttgc 11016258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 28071508 - 28071453
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28071508 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 28071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 50063749 - 50063804
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  50063749 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtcaccgtt 50063804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 10174692 - 10174769
Alignment:
Q  176 ggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaa 253  Q
    ||||||||||||||||| |||||||| || | |||||||||  | || | ||| |||||||||||||||||| |||||    
T  10174692 ggccaacaaaacaaatgaccacaacatgtcaaaacaggatctcttgcaatatccaaacaaatattacaatcaaagaaa 10174769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 2035312 - 2035280
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  2035312 acaaatcaattacttacttctcttcctgcttgc 2035280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 562
Target Start/End: Complemental strand, 25516880 - 25516846
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggta 562  Q
    ||||||||||||||||||| |||||||||||||||    
T  25516880 accggtaccgggattgcggccgttacaaaacggta 25516846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 562
Target Start/End: Original strand, 25536738 - 25536772
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggta 562  Q
    ||||||||||||||||||| |||||||||||||||    
T  25536738 accggtaccgggattgcggccgttacaaaacggta 25536772  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 28071302 - 28071270
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||| ||||||||||||||||||||||||||    
T  28071302 acaaatgaattacttacttctcttcctgcttgc 28071270  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 2544979 - 2545034
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2544979 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 2545034  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 35127269 - 35127214
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35127269 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 35127214  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 36430005 - 36430060
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36430005 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtt 36430060  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 46278520 - 46278575
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  46278520 accggtaccgggattgcggccgttacaaaacggtatcagcagccaacgtgaccgtt 46278575  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Original strand, 9291987 - 9292019
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  9291987 acaaatcaattacttacttctcttcctgcttgc 9292019  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 35127084 - 35127052
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  35127084 acaaatcaattacttacttctcttcctgcttgc 35127052  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 584 - 615
Target Start/End: Original strand, 2545206 - 2545237
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttg 615  Q
    ||||||||||||||||||||||||||||||||    
T  2545206 acaaatcaattacttacttctcttcctgcttg 2545237  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 616
Target Start/End: Original strand, 36430155 - 36430185
Alignment:
Q  586 aaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||    
T  36430155 aaatcaattacttacttctcttcctgcttgc 36430185  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 616
Target Start/End: Complemental strand, 37921871 - 37921841
Alignment:
Q  586 aaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||    
T  37921871 aaatcaattacttacttctcttcctgcttgc 37921841  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 12722 - 12667
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12722 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccttgaccgtt 12667  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 17757 - 17702
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  17757 accggtaccgggattgcggccgttacaaaacggtatcagcagccaccttgaccgtt 17702  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 9996 - 9941
Alignment:
Q  528 accggtaccgggattgcggtcgttacaaaacggtatcagcagccaccgtgaccgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  9996 accggtaccgggattgcggccgttacaaaacggtatcagcagccacctttaccgtt 9941  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 9765 - 9733
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  9765 acaaatcaattacttacttctcttcctgcttgc 9733  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 12491 - 12459
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  12491 acaaatcaattacttacttctcttcctgcttgc 12459  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 616
Target Start/End: Complemental strand, 3185922 - 3185890
Alignment:
Q  584 acaaatcaattacttacttctcttcctgcttgc 616  Q
    |||||||||||||||||||||||||||||||||    
T  3185922 acaaatcaattacttacttctcttcctgcttgc 3185890  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 37120179 - 37120092
Alignment:
Q  160 ccatctatacaagcatggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatca 247  Q
    ||||| ||| |||||  |||||||||||| ||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||||||||||    
T  37120179 ccatcgatataagcactgccaacaaaacagatggccacagcaagtcaaaacaggctccttggccaaatccaaacagatattacaatca 37120092  T

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