View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_low_5 (Length: 587)
Name: NF7791_low_5
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 300 - 572
Target Start/End: Original strand, 14599032 - 14599304
Alignment:
| Q |
300 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
399 |
Q |
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| T |
14599032 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccaaggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
14599131 |
T |
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| Q |
400 |
ctgaatcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctttg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14599132 |
ctgaatcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctttt |
14599231 |
T |
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| Q |
500 |
ggaaccgtttggtccttgtaattgcaatgctccatttgaataatcctggccatcgttctcgtattctcctact |
572 |
Q |
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| T |
14599232 |
ggaaccgtttggtccttgtaattgcaatgctccatttgaataatcctggccatcgttctcgtattctcctact |
14599304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 14598746 - 14598862
Alignment:
| Q |
14 |
atatctcacaggtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaagcgaat |
113 |
Q |
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| T |
14598746 |
atatctcacaagtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactaccaagcgaat |
14598845 |
T |
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| Q |
114 |
agcaataagagccctgt |
130 |
Q |
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| T |
14598846 |
agcaataagagccctgt |
14598862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 304 - 496
Target Start/End: Complemental strand, 14609478 - 14609286
Alignment:
| Q |
304 |
ttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcatctga |
403 |
Q |
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| T |
14609478 |
ttatgatgccatttggaactgatctttttcggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttc |
14609379 |
T |
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| Q |
404 |
atcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttct |
496 |
Q |
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| T |
14609378 |
atcgtctggaggccaatatgcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttct |
14609286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 14609730 - 14609622
Alignment:
| Q |
14 |
atatctcacaggtaattgacatgagccataaccatattgcatcttcatttggattggtcactctccaatgtaaaaagaagcacatcactactaagcgaat |
113 |
Q |
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|||||||||| ||||||||||| | ||| ||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14609730 |
atatctcacaagtaattgacataacccacaaccatactgcctctttatttggatgtgtcactctccaatgtaaaaagaagcacattactactaagcgaac |
14609631 |
T |
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| Q |
114 |
agcaataag |
122 |
Q |
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| T |
14609630 |
accaataag |
14609622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 15420556 - 15420619
Alignment:
| Q |
415 |
gccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaa |
478 |
Q |
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||||| ||||||| |||| ||||||||| ||||| ||||||||||||||| |||| |||||||| |
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| T |
15420556 |
gccaaaaagcatttccaattccataggttcctttagtctcaaacaaccatctattatgatcaaa |
15420619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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