View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7791_low_7 (Length: 437)
Name: NF7791_low_7
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 172 - 432
Target Start/End: Complemental strand, 11820809 - 11820549
Alignment:
| Q |
172 |
atctaacttcctatttaaagtaagtaacttataacttgttcggctaccaaagtccaaaagaagtaaagtaacatagccaagctaactaccagacttggat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11820809 |
atctaacttcctatttaaagtaagtaacttataacttgttaggctaccaaagtccaaaagaagtaaaataacatagccaagctaactaccagacttggat |
11820710 |
T |
|
| Q |
272 |
ttactaactaattttttatttgacaaaattttctaactaactaattataagccgcatttnnnnnnnntaaattcaaaggctatatataaaattgagcaaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11820709 |
ttactaactaattttttatttgacaaaattttctaactaactaattataagccgcatttaaaaaaaataaattcaaaggctatatataaaattgagcaaa |
11820610 |
T |
|
| Q |
372 |
tcatgaactaaatatattcaaagatggatatacaatattggttttggatgtgtgccatttt |
432 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
11820609 |
tcatgaactagatatattcaaagatggatatacaattttgggttcggatgtgtgccatttt |
11820549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 11821015 - 11820937
Alignment:
| Q |
19 |
agagacaacatcggtgcctcataaatctcatggtggtgcatgaacaacgatttgccgtgccgtgaaaattctgctttaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821015 |
agagacaacatcggtgcctcataaatcacatggtggtgcatgaacaacgatttgccgtgccgtgaaaattctgctttaa |
11820937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 11819128 - 11819077
Alignment:
| Q |
386 |
tattcaaagatggatatacaatattggttttggatgtgtgccattttatttg |
437 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
11819128 |
tattcaaagatggaaatacaatactgggtttggatgtgtgccattttatttg |
11819077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 11805179 - 11805133
Alignment:
| Q |
386 |
tattcaaagatggatatacaatattggttttggatgtgtgccatttt |
432 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
11805179 |
tattcaaagatggaaatagaatattgggtttggatgtgtgccatttt |
11805133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 151
Target Start/End: Complemental strand, 11820824 - 11820793
Alignment:
| Q |
120 |
actgatgctaactacatctaacttcctattta |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11820824 |
actgatgctaactacatctaacttcctattta |
11820793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University