View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7791_low_8 (Length: 425)
Name: NF7791_low_8
Description: NF7791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7791_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Original strand, 33512645 - 33513042
Alignment:
| Q |
10 |
aagaaaatatccctcaaactctcacctgaatctgatcatgataacacaaatatcattaaggtattgtataatttaagannnnnnnnngtataatttctgg |
109 |
Q |
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| T |
33512645 |
aagaaaatatccctcaaactctcacctgaatctgataatgataacacaaatatcattaaggtattgtataatttaagatttttttttgtataatttctgg |
33512744 |
T |
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| Q |
110 |
taagtccaaaatgttatgcacacggtgaaagcatggtgcggttattgcgtgtcttttagttttctatattttgtcacataatggaaaattagtgtttcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33512745 |
taagtccaaaatgttatgcacacggtgaaagcatggtgcggttattgcgtgtcttttagttttctatattttgtcacataatggaa--ttagtgtttcat |
33512842 |
T |
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| Q |
210 |
cattttcattatactctctctttgttagtgcgtatcttttttactccttagatttcttccacgttcatatatatagcactatcatacactaaatgtggcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33512843 |
cattttcattatactctctctttgttagtgcgtatcttttttactccttagatttcttccacgttcatatatatagcactatcatacactaaatgtggcc |
33512942 |
T |
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| Q |
310 |
ttatcctctaaatgaaatttgaaccatggttggccatatagaaacacaaatagtagattcataactttaaaattgtcgaggctatataacttgataattc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33512943 |
ttatcctctaaatgaaatttgaaccatggttggccatatagaaacacaaatagtagattcataactttaaaattgttgaggctatataacttgataattc |
33513042 |
T |
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